The 2.0 version of rSNPBase

Variant report

Variant rs72709490
Chromosome Location chr1:179187942-179187943
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:100 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:179122000-179189400 Weak transcription Primary B cells from cord blood blood
2 chr1:179139400-179196800 Weak transcription Pancreas Pancrea
3 chr1:179157400-179197400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
4 chr1:179157400-179197600 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
5 chr1:179160800-179188000 Weak transcription Primary T helper cells fromperipheralblood blood
6 chr1:179169000-179197400 Weak transcription NHEK skin
7 chr1:179170200-179197200 Weak transcription Fetal Intestine Large intestine
8 chr1:179172800-179189800 Weak transcription Primary T cells from cord blood blood
9 chr1:179175200-179189200 Weak transcription Primary T helper cells PMA-I stimulated --
10 chr1:179176200-179195800 Weak transcription Colon Smooth Muscle Colon
11 chr1:179176200-179195800 Weak transcription Rectal Mucosa Donor 31 rectum
12 chr1:179176200-179196600 Weak transcription Primary T helper naive cells from peripheral blood blood
13 chr1:179176200-179197600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
14 chr1:179176400-179196200 Weak transcription Duodenum Smooth Muscle Duodenum
15 chr1:179176400-179197000 Weak transcription Fetal Brain Male brain
16 chr1:179176400-179197400 Weak transcription Fetal Lung lung
17 chr1:179176400-179197600 Weak transcription Left Ventricle heart
18 chr1:179176600-179196200 Weak transcription Brain Hippocampus Middle brain
19 chr1:179176800-179189400 Weak transcription Brain Inferior Temporal Lobe brain
20 chr1:179177000-179196000 Weak transcription Fetal Brain Female brain
21 chr1:179177000-179197600 Weak transcription HSMMtube muscle
22 chr1:179177400-179197200 Weak transcription Brain Germinal Matrix brain
23 chr1:179177800-179196600 Weak transcription Pancreatic Islets Pancreatic Islet
24 chr1:179178000-179196000 Weak transcription Aorta Aorta
25 chr1:179178000-179197600 Weak transcription Gastric stomach
26 chr1:179178400-179189400 Weak transcription HepG2 liver
27 chr1:179178400-179189600 Weak transcription Fetal Adrenal Gland Adrenal Gland
28 chr1:179178400-179197600 Weak transcription HUES64 Cell Line embryonic stem cell
29 chr1:179178600-179189000 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
30 chr1:179178600-179197600 Weak transcription HUES6 Cell Line embryonic stem cell
31 chr1:179178600-179197600 Weak transcription NH-A brain
32 chr1:179178800-179197400 Weak transcription ES-I3 Cell Line embryonic stem cell
33 chr1:179179200-179189800 Weak transcription Primary T helper naive cells fromperipheralblood blood
34 chr1:179179200-179196000 Weak transcription Sigmoid Colon Sigmoid Colon
35 chr1:179179200-179197400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
36 chr1:179179800-179197200 Weak transcription Thymus Thymus
37 chr1:179180200-179197600 Weak transcription iPS-18 Cell Line embryonic stem cell
38 chr1:179180800-179197200 Weak transcription Stomach Smooth Muscle stomach
39 chr1:179181600-179197600 Weak transcription Breast Myoepithelial Primary Cells Breast
40 chr1:179182600-179189800 Weak transcription Fetal Muscle Trunk muscle
41 chr1:179183200-179196000 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
42 chr1:179183400-179193000 Weak transcription Fetal Muscle Leg muscle
43 chr1:179184000-179188600 Strong transcription Fetal Intestine Small intestine
44 chr1:179184200-179196800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
45 chr1:179184400-179193400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
46 chr1:179184400-179197600 Weak transcription Fetal Thymus thymus
47 chr1:179184600-179189600 Weak transcription Primary T cells fromperipheralblood blood
48 chr1:179184600-179196200 Weak transcription Primary T helper 17 cells PMA-I stimulated --
49 chr1:179184600-179196600 Weak transcription Primary T killer memory cells from peripheral blood blood
50 chr1:179184800-179189000 Weak transcription Primary Natural Killer cells fromperipheralblood blood

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Last update: Aug 31, 2015