Variant report

Variant	rs72707277
Chromosome Location	chr1:178976624-178976625
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:178974332..178978304-chr1:178979195..178983919,4	MCF-7	breast:
2	chr1:178975112..178978831-chr1:178980259..178984628,4	MCF-7	breast:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs11799509	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11801262	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11802142	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11804174	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11811569	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11811579	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs28913876	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28913894	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28914473	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs61758794	1.00[ASN][1000 genomes]
rs72707250	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72707269	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72707270	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72707273	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72707274	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72707275	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72707276	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72707289	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72707290	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72707297	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72709407	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72709410	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72709411	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72709420	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72709430	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72709434	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72709443	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72709451	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72709459	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72709462	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72709463	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72709464	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72709467	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72709474	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72709475	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72709476	1.00[ASN][1000 genomes]
rs72709477	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72709479	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72709481	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72709485	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72709486	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72709487	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72709488	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72709490	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72709492	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72709493	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72709494	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv441722	chr1:178953746-178976729	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:178972400-178977800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr1:178972400-178986000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr1:178972600-178977800	Weak transcription	Stomach Smooth Muscle	stomach
4	chr1:178972600-178978000	Weak transcription	Adipose Nuclei	Adipose
5	chr1:178972600-178981200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr1:178972800-178978000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr1:178973200-178977800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr1:178973200-178979600	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr1:178973400-178980200	Weak transcription	Fetal Intestine Small	intestine
10	chr1:178973400-178980200	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr1:178973600-178983200	Weak transcription	K562	blood
12	chr1:178976400-178977400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr1:178976600-178977000	Enhancers	A549	lung
14	chr1:178976600-178977200	Enhancers	Stomach Mucosa	stomach
15	chr1:178976600-178977200	Enhancers	HepG2	liver
16	chr1:178976600-178977400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr1:178976600-178978600	Enhancers	Osteobl	bone

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