The 2.0 version of rSNPBase

Variant report

Variant rs72709420
Chromosome Location chr1:179025673-179025674
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:119 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:178998400-179027400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
2 chr1:179003800-179025800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
3 chr1:179006400-179032400 Weak transcription Esophagus oesophagus
4 chr1:179008000-179033000 Weak transcription Primary T helper 17 cells PMA-I stimulated --
5 chr1:179008400-179033000 Weak transcription Primary mononuclear cells fromperipheralblood Blood
6 chr1:179008400-179041000 Weak transcription Small Intestine intestine
7 chr1:179008600-179033000 Weak transcription Brain Angular Gyrus brain
8 chr1:179008600-179035000 Weak transcription Primary T killer memory cells from peripheral blood blood
9 chr1:179008600-179049800 Weak transcription Primary T helper naive cells from peripheral blood blood
10 chr1:179008600-179049800 Weak transcription Primary T killer naive cells fromperipheralblood blood
11 chr1:179009400-179033000 Weak transcription Gastric stomach
12 chr1:179009600-179050400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
13 chr1:179012200-179033000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
14 chr1:179012400-179025800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
15 chr1:179012600-179027600 Weak transcription Lung lung
16 chr1:179013200-179027400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
17 chr1:179013200-179027400 Weak transcription H9 Cell Line embryonic stem cell
18 chr1:179013200-179032600 Weak transcription GM12878-XiMat blood
19 chr1:179013400-179030200 Weak transcription Fetal Intestine Small intestine
20 chr1:179013400-179030400 Weak transcription Fetal Stomach stomach
21 chr1:179013400-179033200 Weak transcription Thymus Thymus
22 chr1:179016600-179032600 Weak transcription Aorta Aorta
23 chr1:179016800-179027400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
24 chr1:179016800-179027600 Weak transcription Pancreas Pancrea
25 chr1:179016800-179030400 Weak transcription Psoas Muscle Psoas
26 chr1:179016800-179033000 Weak transcription Spleen Spleen
27 chr1:179016800-179033200 Weak transcription Rectal Smooth Muscle rectum
28 chr1:179017000-179026800 Weak transcription Muscle Satellite Cultured Cells --
29 chr1:179017000-179027400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
30 chr1:179017000-179027400 Weak transcription NH-A brain
31 chr1:179017000-179033200 Weak transcription Right Ventricle heart
32 chr1:179017200-179029800 Weak transcription HepG2 liver
33 chr1:179018000-179033000 Weak transcription Skeletal Muscle Male skeletal muscle
34 chr1:179018600-179026200 Strong transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
35 chr1:179018800-179032800 Weak transcription Brain Germinal Matrix brain
36 chr1:179019000-179026400 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
37 chr1:179019800-179027600 Weak transcription Colon Smooth Muscle Colon
38 chr1:179019800-179033200 Weak transcription Brain Cingulate Gyrus brain
39 chr1:179021000-179032400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
40 chr1:179022600-179027600 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
41 chr1:179022800-179031400 Weak transcription Brain Inferior Temporal Lobe brain
42 chr1:179022800-179033000 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
43 chr1:179022800-179033000 Weak transcription Brain Anterior Caudate brain
44 chr1:179023000-179033400 Weak transcription Stomach Mucosa stomach
45 chr1:179023400-179026000 Strong transcription Fetal Intestine Large intestine
46 chr1:179023600-179025800 Strong transcription Primary T helper naive cells fromperipheralblood blood
47 chr1:179023600-179026000 Strong transcription Breast Myoepithelial Primary Cells Breast
48 chr1:179023600-179026200 Strong transcription Foreskin Fibroblast Primary Cells skin01 Skin
49 chr1:179023600-179026200 Strong transcription Dnd41 blood
50 chr1:179023600-179026400 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin

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Last update: Aug 31, 2015