The 2.0 version of rSNPBase

Variant report

Variant rs28913894
Chromosome Location chr1:179076672-179076673
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:125 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:179053200-179096000 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
2 chr1:179054000-179077200 Weak transcription Primary T helper naive cells from peripheral blood blood
3 chr1:179054000-179079400 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
4 chr1:179057200-179076800 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
5 chr1:179059200-179096400 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
6 chr1:179059400-179090400 Strong transcription HUVEC blood vessel
7 chr1:179061400-179090400 Strong transcription HSMM muscle
8 chr1:179062000-179088000 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
9 chr1:179063200-179112000 Weak transcription Fetal Kidney kidney
10 chr1:179063400-179077000 Weak transcription Stomach Mucosa stomach
11 chr1:179064200-179078200 Weak transcription Right Ventricle heart
12 chr1:179064600-179077200 Strong transcription Foreskin Fibroblast Primary Cells skin01 Skin
13 chr1:179064800-179077000 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
14 chr1:179064800-179079200 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
15 chr1:179064800-179097800 Weak transcription Primary T killer memory cells from peripheral blood blood
16 chr1:179065000-179077400 Weak transcription Colonic Mucosa Colon
17 chr1:179065000-179078000 Weak transcription Primary T killer naive cells fromperipheralblood blood
18 chr1:179065400-179076800 Weak transcription Small Intestine intestine
19 chr1:179066400-179076800 Weak transcription Primary T helper cells fromperipheralblood blood
20 chr1:179066400-179077200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
21 chr1:179066600-179076800 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
22 chr1:179066600-179076800 Weak transcription Esophagus oesophagus
23 chr1:179066800-179077200 Weak transcription Primary neutrophils fromperipheralblood blood
24 chr1:179067200-179076800 Weak transcription ES-I3 Cell Line embryonic stem cell
25 chr1:179069400-179080400 Strong transcription HMEC breast
26 chr1:179070400-179087200 Weak transcription Psoas Muscle Psoas
27 chr1:179071400-179090400 Strong transcription NHDF-Ad bronchial
28 chr1:179072000-179090400 Strong transcription Osteobl bone
29 chr1:179072200-179090000 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
30 chr1:179072600-179076800 Enhancers Liver Liver
31 chr1:179074200-179088200 Strong transcription NHEK skin
32 chr1:179074200-179091000 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
33 chr1:179074400-179088200 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
34 chr1:179074600-179083000 Strong transcription Primary T cells from cord blood blood
35 chr1:179074800-179077200 Weak transcription Pancreatic Islets Pancreatic Islet
36 chr1:179074800-179078000 Weak transcription Fetal Brain Male brain
37 chr1:179075200-179091200 Strong transcription NHLF lung
38 chr1:179075400-179080000 Strong transcription Foreskin Melanocyte Primary Cells skin01 Skin
39 chr1:179075400-179084200 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
40 chr1:179075400-179091000 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
41 chr1:179075400-179091400 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
42 chr1:179075400-179096200 Strong transcription Breast Myoepithelial Primary Cells Breast
43 chr1:179075600-179077000 Genic enhancers Fetal Adrenal Gland Adrenal Gland
44 chr1:179075600-179078000 Genic enhancers IMR90 fetal lung fibroblasts Cell Line lung
45 chr1:179075600-179078000 Genic enhancers HSMMtube muscle
46 chr1:179075600-179080000 Strong transcription Hela-S3 cervix
47 chr1:179075600-179080200 Strong transcription Primary monocytes fromperipheralblood blood
48 chr1:179075600-179081000 Strong transcription Fetal Brain Female brain
49 chr1:179075600-179081800 Strong transcription HUES6 Cell Line embryonic stem cell
50 chr1:179075600-179082000 Strong transcription Cortex derived primary cultured neurospheres brain

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Last update: Aug 31, 2015