The 2.0 version of rSNPBase

Variant report

Variant rs72709475
Chromosome Location chr1:179148068-179148069
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:51 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:179117800-179186000 Weak transcription Fetal Stomach stomach
2 chr1:179122000-179189400 Weak transcription Primary B cells from cord blood blood
3 chr1:179122400-179153000 Weak transcription Primary T cells from cord blood blood
4 chr1:179134000-179169000 Weak transcription Fetal Intestine Small intestine
5 chr1:179139400-179157200 Weak transcription K562 blood
6 chr1:179139400-179158800 Weak transcription Sigmoid Colon Sigmoid Colon
7 chr1:179139400-179196800 Weak transcription Pancreas Pancrea
8 chr1:179144000-179149000 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
9 chr1:179144400-179148600 Enhancers Osteobl bone
10 chr1:179144800-179149000 Enhancers NHDF-Ad bronchial
11 chr1:179144800-179159200 Weak transcription iPS-15b Cell Line embryonic stem cell
12 chr1:179145000-179158600 Weak transcription Primary hematopoietic stem cells short term culture blood
13 chr1:179145000-179159800 Weak transcription ES-I3 Cell Line embryonic stem cell
14 chr1:179145000-179159800 Weak transcription Brain Angular Gyrus brain
15 chr1:179145400-179159000 Weak transcription Right Ventricle heart
16 chr1:179146000-179148800 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
17 chr1:179146000-179149200 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
18 chr1:179146000-179150600 Enhancers HSMMtube muscle
19 chr1:179146200-179148800 Enhancers Muscle Satellite Cultured Cells --
20 chr1:179146200-179148800 Enhancers NH-A brain
21 chr1:179146200-179150800 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
22 chr1:179146400-179150600 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
23 chr1:179146600-179148600 Weak transcription Ovary ovary
24 chr1:179146600-179150200 Weak transcription Brain Substantia Nigra brain
25 chr1:179146800-179148800 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
26 chr1:179146800-179175600 Weak transcription Cortex derived primary cultured neurospheres brain
27 chr1:179147000-179149600 Weak transcription Brain Hippocampus Middle brain
28 chr1:179147000-179150000 Weak transcription Brain Anterior Caudate brain
29 chr1:179147200-179148200 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
30 chr1:179147200-179148600 Weak transcription Breast Myoepithelial Primary Cells Breast
31 chr1:179147200-179150400 Weak transcription Colon Smooth Muscle Colon
32 chr1:179147200-179150800 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
33 chr1:179147400-179148400 Weak transcription HSMM muscle
34 chr1:179147400-179150000 Weak transcription Skeletal Muscle Female skeletal muscle
35 chr1:179147400-179150600 Enhancers HMEC breast
36 chr1:179147600-179148400 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
37 chr1:179147600-179149600 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
38 chr1:179147600-179160000 Weak transcription Primary B cells from peripheral blood blood
39 chr1:179147600-179174600 Weak transcription Psoas Muscle Psoas
40 chr1:179147800-179149400 Enhancers A549 lung
41 chr1:179147800-179149800 Enhancers Foreskin Fibroblast Primary Cells skin02 Skin
42 chr1:179148000-179148200 Enhancers Brain Dorsolateral Prefrontal Cortex brain
43 chr1:179148000-179148200 Enhancers Stomach Smooth Muscle stomach
44 chr1:179148000-179148400 Enhancers Rectal Smooth Muscle rectum
45 chr1:179148000-179148400 Enhancers Skeletal Muscle Male skeletal muscle
46 chr1:179148000-179148600 Enhancers Hela-S3 cervix
47 chr1:179148000-179148800 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
48 chr1:179148000-179148800 Enhancers HUVEC blood vessel
49 chr1:179148000-179149000 Enhancers NHLF lung
50 chr1:179148000-179150800 Enhancers NHEK skin

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Last update: Aug 31, 2015