The 2.0 version of rSNPBase

Variant report

Variant rs11799509
Chromosome Location chr1:179109250-179109251
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:87 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:179063200-179112000 Weak transcription Fetal Kidney kidney
2 chr1:179079600-179109800 Weak transcription Small Intestine intestine
3 chr1:179087800-179113000 Weak transcription Placenta Amnion Placenta Amnion
4 chr1:179093400-179117200 Weak transcription Fetal Stomach stomach
5 chr1:179096600-179110200 Weak transcription Cortex derived primary cultured neurospheres brain
6 chr1:179098200-179112000 Weak transcription Lung lung
7 chr1:179099200-179110200 Weak transcription Primary hematopoietic stem cells blood
8 chr1:179099200-179110400 Weak transcription Brain Angular Gyrus brain
9 chr1:179099200-179110400 Weak transcription Brain Anterior Caudate brain
10 chr1:179099200-179114800 Weak transcription Brain Cingulate Gyrus brain
11 chr1:179099400-179110000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
12 chr1:179099400-179110400 Weak transcription Duodenum Smooth Muscle Duodenum
13 chr1:179099400-179112000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
14 chr1:179099400-179112000 Weak transcription Left Ventricle heart
15 chr1:179099600-179109800 Weak transcription Primary monocytes fromperipheralblood blood
16 chr1:179099600-179109800 Weak transcription Primary T cells fromperipheralblood blood
17 chr1:179099600-179110000 Weak transcription Monocytes-CD14+_RO01746 blood
18 chr1:179099600-179110200 Weak transcription Primary B cells from peripheral blood blood
19 chr1:179099600-179110600 Weak transcription Rectal Smooth Muscle rectum
20 chr1:179099600-179110800 Weak transcription Primary T helper 17 cells PMA-I stimulated --
21 chr1:179099600-179116800 Weak transcription Thymus Thymus
22 chr1:179099600-179119400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
23 chr1:179099600-179122600 Weak transcription Stomach Smooth Muscle stomach
24 chr1:179099800-179109400 Weak transcription Primary B cells from cord blood blood
25 chr1:179099800-179111800 Weak transcription HepG2 liver
26 chr1:179100000-179121000 Weak transcription Rectal Mucosa Donor 31 rectum
27 chr1:179100200-179110000 Weak transcription Primary hematopoietic stem cells short term culture blood
28 chr1:179100600-179110800 Weak transcription Brain Inferior Temporal Lobe brain
29 chr1:179100600-179112000 Weak transcription Sigmoid Colon Sigmoid Colon
30 chr1:179100600-179117200 Weak transcription Fetal Intestine Small intestine
31 chr1:179100800-179110400 Weak transcription HUES48 Cell Line embryonic stem cell
32 chr1:179100800-179110400 Weak transcription K562 blood
33 chr1:179101000-179110000 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
34 chr1:179106800-179110200 Transcr. at gene 5' and 3' Foreskin Melanocyte Primary Cells skin03 Skin
35 chr1:179106800-179110400 Transcr. at gene 5' and 3' Foreskin Fibroblast Primary Cells skin01 Skin
36 chr1:179107000-179110000 Transcr. at gene 5' and 3' Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
37 chr1:179107200-179110200 Weak transcription Primary neutrophils fromperipheralblood blood
38 chr1:179107200-179110200 Weak transcription Primary T killer memory cells from peripheral blood blood
39 chr1:179107200-179110800 Weak transcription Skeletal Muscle Female skeletal muscle
40 chr1:179107200-179112000 Weak transcription Brain Substantia Nigra brain
41 chr1:179107400-179110200 Weak transcription Adipose Nuclei Adipose
42 chr1:179107400-179111000 Weak transcription Skeletal Muscle Male skeletal muscle
43 chr1:179107600-179110400 Weak transcription Pancreatic Islets Pancreatic Islet
44 chr1:179107600-179111800 Weak transcription Fetal Muscle Leg muscle
45 chr1:179107600-179112000 Weak transcription Fetal Lung lung
46 chr1:179107600-179112000 Weak transcription Placenta Placenta
47 chr1:179107600-179119800 Weak transcription Liver Liver
48 chr1:179107800-179110000 ZNF genes & repeats ES-UCSF4 Cell Line embryonic stem cell
49 chr1:179108000-179110000 Transcr. at gene 5' and 3' Foreskin Fibroblast Primary Cells skin02 Skin
50 chr1:179108200-179113200 Active TSS Foreskin Melanocyte Primary Cells skin01 Skin

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Last update: Aug 31, 2015