The 2.0 version of rSNPBase

Variant report

Variant rs72709463
Chromosome Location chr1:179117453-179117454
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:61 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:179099600-179119400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
2 chr1:179099600-179122600 Weak transcription Stomach Smooth Muscle stomach
3 chr1:179100000-179121000 Weak transcription Rectal Mucosa Donor 31 rectum
4 chr1:179107600-179119800 Weak transcription Liver Liver
5 chr1:179110000-179118400 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
6 chr1:179110200-179121400 Weak transcription Fetal Adrenal Gland Adrenal Gland
7 chr1:179111000-179118200 Weak transcription Primary B cells from cord blood blood
8 chr1:179111400-179118400 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
9 chr1:179111400-179121400 Weak transcription iPS-20b Cell Line embryonic stem cell
10 chr1:179111400-179121400 Weak transcription Skeletal Muscle Male skeletal muscle
11 chr1:179112200-179118800 Weak transcription Fetal Intestine Large intestine
12 chr1:179112200-179121800 Weak transcription Adipose Nuclei Adipose
13 chr1:179112200-179121800 Weak transcription Colon Smooth Muscle Colon
14 chr1:179112200-179124600 Weak transcription Left Ventricle heart
15 chr1:179112400-179117600 Weak transcription Right Ventricle heart
16 chr1:179112400-179118400 Weak transcription Breast Myoepithelial Primary Cells Breast
17 chr1:179112400-179119600 Weak transcription HepG2 liver
18 chr1:179112400-179121000 Weak transcription Primary B cells from peripheral blood blood
19 chr1:179112400-179121200 Weak transcription Sigmoid Colon Sigmoid Colon
20 chr1:179112400-179121400 Weak transcription Primary T helper naive cells from peripheral blood blood
21 chr1:179112400-179121400 Weak transcription Small Intestine intestine
22 chr1:179112400-179121600 Weak transcription Primary T killer memory cells from peripheral blood blood
23 chr1:179112400-179133000 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
24 chr1:179112400-179139000 Weak transcription K562 blood
25 chr1:179112800-179119000 Weak transcription Primary hematopoietic stem cells short term culture blood
26 chr1:179113200-179133000 Weak transcription Hela-S3 cervix
27 chr1:179113600-179121600 Weak transcription Ovary ovary
28 chr1:179113800-179121200 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
29 chr1:179114200-179119800 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
30 chr1:179115000-179119600 Weak transcription A549 lung
31 chr1:179115600-179121000 Weak transcription Primary T cells from cord blood blood
32 chr1:179116000-179121200 Weak transcription Psoas Muscle Psoas
33 chr1:179116000-179121600 Weak transcription Fetal Heart heart
34 chr1:179116200-179117600 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
35 chr1:179116200-179118400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
36 chr1:179116200-179118600 Weak transcription NH-A brain
37 chr1:179116200-179120200 Weak transcription NHEK skin
38 chr1:179116200-179121000 Weak transcription Primary T helper naive cells fromperipheralblood blood
39 chr1:179116200-179121400 Weak transcription HSMM muscle
40 chr1:179116200-179122600 Weak transcription NHLF lung
41 chr1:179116200-179124000 Weak transcription Osteobl bone
42 chr1:179116200-179124400 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
43 chr1:179116200-179133000 Weak transcription NHDF-Ad bronchial
44 chr1:179116400-179119600 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
45 chr1:179116400-179121400 Weak transcription Primary T helper cells PMA-I stimulated --
46 chr1:179116400-179121400 Weak transcription Muscle Satellite Cultured Cells --
47 chr1:179116400-179133400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
48 chr1:179116600-179119200 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
49 chr1:179116600-179123400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
50 chr1:179116800-179117800 Strong transcription Thymus Thymus

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Last update: Aug 31, 2015