The 2.0 version of rSNPBase

Variant report

Variant rs11801262
Chromosome Location chr1:178987598-178987599
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:70 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:178978600-178991000 Weak transcription Aorta Aorta
2 chr1:178978600-178991200 Weak transcription Psoas Muscle Psoas
3 chr1:178985400-178988200 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
4 chr1:178985400-178988200 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
5 chr1:178985600-178987600 Enhancers Fetal Muscle Leg muscle
6 chr1:178985600-178987600 Enhancers Ovary ovary
7 chr1:178985600-178987600 Flanking Active TSS K562 blood
8 chr1:178985600-178988600 Enhancers Foreskin Melanocyte Primary Cells skin01 Skin
9 chr1:178986000-178987800 Enhancers Placenta Placenta
10 chr1:178986400-178988000 Active TSS Duodenum Mucosa Duodenum
11 chr1:178986400-178988200 Active TSS Colonic Mucosa Colon
12 chr1:178986400-178988800 Weak transcription Esophagus oesophagus
13 chr1:178986400-178991000 Weak transcription Gastric stomach
14 chr1:178986400-178991200 Weak transcription Primary hematopoietic stem cells blood
15 chr1:178986400-178994200 Weak transcription Right Atrium heart
16 chr1:178986400-178994200 Weak transcription Spleen Spleen
17 chr1:178986400-178994400 Weak transcription Lung lung
18 chr1:178986600-178989400 Weak transcription Sigmoid Colon Sigmoid Colon
19 chr1:178986600-178991000 Weak transcription Fetal Muscle Trunk muscle
20 chr1:178986600-178991200 Weak transcription Breast Myoepithelial Primary Cells Breast
21 chr1:178986600-178994000 Weak transcription Primary hematopoietic stem cells short term culture blood
22 chr1:178986800-178988400 Active TSS Rectal Mucosa Donor 29 rectum
23 chr1:178986800-178991000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
24 chr1:178986800-178991200 Weak transcription Skeletal Muscle Male skeletal muscle
25 chr1:178986800-178994200 Weak transcription Liver Liver
26 chr1:178987000-178987600 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
27 chr1:178987000-178987600 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
28 chr1:178987000-178988200 Enhancers Adipose Nuclei Adipose
29 chr1:178987000-178988400 Enhancers Fetal Adrenal Gland Adrenal Gland
30 chr1:178987000-178991000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
31 chr1:178987000-178991000 Weak transcription Skeletal Muscle Female skeletal muscle
32 chr1:178987200-178987600 Active TSS Fetal Intestine Large intestine
33 chr1:178987200-178988000 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
34 chr1:178987200-178988200 Enhancers HepG2 liver
35 chr1:178987200-178989800 Enhancers Stomach Mucosa stomach
36 chr1:178987200-178990600 Weak transcription Primary monocytes fromperipheralblood blood
37 chr1:178987200-178990600 Weak transcription Duodenum Smooth Muscle Duodenum
38 chr1:178987200-178991000 Weak transcription Colon Smooth Muscle Colon
39 chr1:178987200-178994200 Weak transcription Fetal Lung lung
40 chr1:178987400-178987600 Enhancers Foreskin Fibroblast Primary Cells skin02 Skin
41 chr1:178987400-178987600 Flanking Active TSS Fetal Intestine Small intestine
42 chr1:178987400-178987600 Enhancers NHDF-Ad bronchial
43 chr1:178987400-178987800 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
44 chr1:178987400-178988000 Active TSS Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
45 chr1:178987400-178988000 Active TSS Rectal Mucosa Donor 31 rectum
46 chr1:178987400-178988200 Enhancers Hela-S3 cervix
47 chr1:178987400-178989000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
48 chr1:178987400-178989000 Weak transcription Rectal Smooth Muscle rectum
49 chr1:178987400-178990400 Weak transcription Brain Angular Gyrus brain
50 chr1:178987400-178990400 Weak transcription A549 lung

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Last update: Aug 31, 2015