Variant report

Variant	rs3766634
Chromosome Location	chr1:179016772-179016773
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:178911848..178913761-chr1:179016599..179019531,2	K562	blood:
2	chr1:178985118..178988730-chr1:179014832..179016869,4	K562	blood:
3	chr1:179006443..179009675-chr1:179013601..179018312,6	K562	blood:
4	chr1:179015639..179017468-chr1:179021224..179023269,2	MCF-7	breast:
5	chr1:179000401..179003914-chr1:179016181..179018558,5	K562	blood:
6	chr1:178992800..178999926-chr1:179009509..179018222,23	K562	blood:
7	chr1:179008660..179014261-chr1:179016259..179020723,5	MCF-7	breast:
8	chr1:179015153..179018084-chr1:179028632..179031488,3	K562	blood:
9	chr1:179013711..179016845-chr1:179018300..179020662,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000116199	Chromatin interaction

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10157463	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10158768	0.81[ASN][1000 genomes]
rs10913675	0.97[ASN][1000 genomes]
rs10913687	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs11801262	0.81[EUR][1000 genomes]
rs11802142	0.90[EUR][1000 genomes]
rs11804174	0.90[EUR][1000 genomes]
rs11808217	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12064695	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs12066589	0.85[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs12067262	0.97[ASN][1000 genomes]
rs12071751	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12075028	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12076957	0.85[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs12079974	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12083856	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12086225	0.97[ASN][1000 genomes]
rs12088051	0.86[YRI][hapmap]
rs12089188	0.97[ASN][1000 genomes]
rs12091355	0.94[ASN][1000 genomes]
rs12143004	1.00[JPT][hapmap]
rs16853551	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16853619	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[YRI][hapmap];0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17277358	1.00[JPT][hapmap]
rs17361990	1.00[JPT][hapmap]
rs17362128	1.00[JPT][hapmap]
rs2274228	0.83[ASN][1000 genomes]
rs2274230	1.00[JPT][hapmap]
rs3753532	1.00[JPT][hapmap]
rs3766631	0.85[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs3766633	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs45499094	0.83[ASN][1000 genomes]
rs57215421	1.00[ASN][1000 genomes]
rs58726191	0.97[ASN][1000 genomes]
rs6425515	0.93[YRI][hapmap]
rs72707289	0.81[EUR][1000 genomes]
rs72707290	0.81[EUR][1000 genomes]
rs72707297	0.90[EUR][1000 genomes]
rs72709407	0.90[EUR][1000 genomes]
rs72709410	0.90[EUR][1000 genomes]
rs72709411	0.90[EUR][1000 genomes]
rs72709420	0.90[EUR][1000 genomes]
rs72709430	0.90[EUR][1000 genomes]
rs72709434	0.90[EUR][1000 genomes]
rs72709443	0.90[EUR][1000 genomes]
rs7516491	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs7519023	0.97[ASN][1000 genomes]
rs7552470	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9650997	1.00[JPT][hapmap]
rs9725888	0.85[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs9726948	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9730271	0.81[ASN][1000 genomes]

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:178998400-179027400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr1:179001600-179017000	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr1:179002000-179019200	Weak transcription	Adipose Nuclei	Adipose
4	chr1:179003800-179025800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr1:179004200-179024200	Weak transcription	Liver	Liver
6	chr1:179004400-179019200	Weak transcription	Duodenum Mucosa	Duodenum
7	chr1:179004400-179024200	Weak transcription	Fetal Kidney	kidney
8	chr1:179004800-179024600	Weak transcription	Primary B cells from cord blood	blood
9	chr1:179006000-179024200	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr1:179006400-179024800	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr1:179006400-179032400	Weak transcription	Esophagus	oesophagus
12	chr1:179006800-179024200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr1:179007000-179024200	Weak transcription	HUVEC	blood vessel
14	chr1:179007600-179024200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr1:179008000-179019200	Weak transcription	Brain Cingulate Gyrus	brain
16	chr1:179008000-179033000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
17	chr1:179008400-179021600	Weak transcription	Monocytes-CD14+_RO01746	blood
18	chr1:179008400-179023600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
19	chr1:179008400-179033000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr1:179008400-179041000	Weak transcription	Small Intestine	intestine
21	chr1:179008600-179016800	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr1:179008600-179018600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr1:179008600-179020600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr1:179008600-179022200	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr1:179008600-179022200	Weak transcription	Brain Substantia Nigra	brain
26	chr1:179008600-179022200	Weak transcription	Stomach Mucosa	stomach
27	chr1:179008600-179023600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
28	chr1:179008600-179023600	Weak transcription	Primary T helper cells fromperipheralblood	blood
29	chr1:179008600-179024200	Weak transcription	Primary B cells from peripheral blood	blood
30	chr1:179008600-179024400	Weak transcription	Hela-S3	cervix
31	chr1:179008600-179033000	Weak transcription	Brain Angular Gyrus	brain
32	chr1:179008600-179035000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
33	chr1:179008600-179049800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
34	chr1:179008600-179049800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
35	chr1:179008800-179024400	Weak transcription	NHDF-Ad	bronchial
36	chr1:179008800-179024800	Weak transcription	HMEC	breast
37	chr1:179009400-179033000	Weak transcription	Gastric	stomach
38	chr1:179009600-179050400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr1:179011200-179022200	Weak transcription	Fetal Intestine Large	intestine
40	chr1:179011600-179023600	Weak transcription	Dnd41	blood
41	chr1:179011600-179025400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
42	chr1:179011800-179024800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr1:179011800-179025200	Weak transcription	HUES6 Cell Line	embryonic stem cell
44	chr1:179012000-179022600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr1:179012000-179025200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
46	chr1:179012200-179024000	Weak transcription	Cortex derived primary cultured neurospheres	brain
47	chr1:179012200-179033000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
48	chr1:179012400-179025800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
49	chr1:179012600-179024200	Weak transcription	Fetal Thymus	thymus
50	chr1:179012600-179027600	Weak transcription	Lung	lung

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