The 2.0 version of rSNPBase

Variant report

Variant rs7552470
Chromosome Location chr1:178997783-178997784
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:118 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:178996200-178997800 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
2 chr1:178996200-178998200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
3 chr1:178996200-178998200 Weak transcription Placenta Placenta
4 chr1:178996200-179001200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
5 chr1:178996200-179003200 Weak transcription Gastric stomach
6 chr1:178996200-179009200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
7 chr1:178996400-178997800 Weak transcription ES-WA7 Cell Line embryonic stem cell
8 chr1:178996400-178998200 Weak transcription H9 Cell Line embryonic stem cell
9 chr1:178996400-178998200 Weak transcription Small Intestine intestine
10 chr1:178996400-178998800 Enhancers Brain Dorsolateral Prefrontal Cortex brain
11 chr1:178996400-178998800 Enhancers Sigmoid Colon Sigmoid Colon
12 chr1:178996400-179000800 Enhancers Primary T cells from cord blood blood
13 chr1:178996400-179001400 Weak transcription Aorta Aorta
14 chr1:178996400-179001800 Enhancers Primary T helper cells fromperipheralblood blood
15 chr1:178996400-179003200 Weak transcription Primary T cells fromperipheralblood blood
16 chr1:178996400-179003200 Weak transcription Esophagus oesophagus
17 chr1:178996400-179006200 Weak transcription Fetal Stomach stomach
18 chr1:178996400-179011200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
19 chr1:178996600-178997800 Weak transcription H1 Cell Line embryonic stem cell
20 chr1:178996600-178998400 Weak transcription Primary neutrophils fromperipheralblood blood
21 chr1:178996600-178999000 Enhancers HUES64 Cell Line embryonic stem cell
22 chr1:178996600-179001000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
23 chr1:178996600-179004000 Weak transcription Fetal Kidney kidney
24 chr1:178996800-178997800 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
25 chr1:178996800-178997800 Weak transcription iPS-15b Cell Line embryonic stem cell
26 chr1:178996800-178997800 Weak transcription Primary B cells from peripheral blood blood
27 chr1:178996800-178997800 Weak transcription Brain Hippocampus Middle brain
28 chr1:178996800-178998000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
29 chr1:178996800-178998000 Weak transcription iPS-18 Cell Line embryonic stem cell
30 chr1:178996800-178998000 Weak transcription Duodenum Smooth Muscle Duodenum
31 chr1:178996800-178998000 Weak transcription Placenta Amnion Placenta Amnion
32 chr1:178996800-178998000 Weak transcription Stomach Smooth Muscle stomach
33 chr1:178996800-178998200 Weak transcription Primary hematopoietic stem cells blood
34 chr1:178996800-178998200 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
35 chr1:178996800-178998200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
36 chr1:178996800-178998200 Weak transcription Primary T killer naive cells fromperipheralblood blood
37 chr1:178996800-178998200 Weak transcription Colon Smooth Muscle Colon
38 chr1:178996800-178998200 Weak transcription Right Atrium heart
39 chr1:178996800-178998200 Weak transcription Skeletal Muscle Male skeletal muscle
40 chr1:178996800-178998400 Enhancers Dnd41 blood
41 chr1:178996800-178998600 Enhancers Hela-S3 cervix
42 chr1:178996800-178998600 Enhancers Monocytes-CD14+_RO01746 blood
43 chr1:178996800-178999000 Enhancers Primary hematopoietic stem cells short term culture blood
44 chr1:178996800-178999800 Enhancers Fetal Intestine Large intestine
45 chr1:178996800-179000000 Enhancers Stomach Mucosa stomach
46 chr1:178996800-179000600 Enhancers Liver Liver
47 chr1:178996800-179000600 Weak transcription Fetal Lung lung
48 chr1:178996800-179000600 Weak transcription HSMMtube muscle
49 chr1:178996800-179000800 Weak transcription Fetal Brain Female brain
50 chr1:178996800-179001000 Weak transcription NH-A brain

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Last update: Aug 31, 2015