The 2.0 version of rSNPBase

Variant report

Variant rs12089188
Chromosome Location chr1:179032215-179032216
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:123 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:179006400-179032400 Weak transcription Esophagus oesophagus
2 chr1:179008000-179033000 Weak transcription Primary T helper 17 cells PMA-I stimulated --
3 chr1:179008400-179033000 Weak transcription Primary mononuclear cells fromperipheralblood Blood
4 chr1:179008400-179041000 Weak transcription Small Intestine intestine
5 chr1:179008600-179033000 Weak transcription Brain Angular Gyrus brain
6 chr1:179008600-179035000 Weak transcription Primary T killer memory cells from peripheral blood blood
7 chr1:179008600-179049800 Weak transcription Primary T helper naive cells from peripheral blood blood
8 chr1:179008600-179049800 Weak transcription Primary T killer naive cells fromperipheralblood blood
9 chr1:179009400-179033000 Weak transcription Gastric stomach
10 chr1:179009600-179050400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
11 chr1:179012200-179033000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
12 chr1:179013200-179032600 Weak transcription GM12878-XiMat blood
13 chr1:179013400-179033200 Weak transcription Thymus Thymus
14 chr1:179016600-179032600 Weak transcription Aorta Aorta
15 chr1:179016800-179033000 Weak transcription Spleen Spleen
16 chr1:179016800-179033200 Weak transcription Rectal Smooth Muscle rectum
17 chr1:179017000-179033200 Weak transcription Right Ventricle heart
18 chr1:179018000-179033000 Weak transcription Skeletal Muscle Male skeletal muscle
19 chr1:179018800-179032800 Weak transcription Brain Germinal Matrix brain
20 chr1:179019800-179033200 Weak transcription Brain Cingulate Gyrus brain
21 chr1:179021000-179032400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
22 chr1:179022800-179033000 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
23 chr1:179022800-179033000 Weak transcription Brain Anterior Caudate brain
24 chr1:179023000-179033400 Weak transcription Stomach Mucosa stomach
25 chr1:179024600-179033200 Weak transcription Primary neutrophils fromperipheralblood blood
26 chr1:179025000-179033000 Weak transcription Sigmoid Colon Sigmoid Colon
27 chr1:179025000-179050200 Weak transcription HUVEC blood vessel
28 chr1:179025400-179033000 Weak transcription Brain Substantia Nigra brain
29 chr1:179025400-179033200 Weak transcription Left Ventricle heart
30 chr1:179025400-179050600 Weak transcription Fetal Brain Male brain
31 chr1:179025600-179050000 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
32 chr1:179025600-179050400 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
33 chr1:179025800-179032600 Weak transcription Ovary ovary
34 chr1:179025800-179032800 Weak transcription Placenta Placenta
35 chr1:179025800-179033000 Weak transcription Brain Hippocampus Middle brain
36 chr1:179025800-179033000 Weak transcription Fetal Thymus thymus
37 chr1:179025800-179050200 Weak transcription Fetal Heart heart
38 chr1:179026000-179032600 Weak transcription Fetal Muscle Trunk muscle
39 chr1:179026000-179033000 Weak transcription Primary Natural Killer cells fromperipheralblood blood
40 chr1:179026000-179033000 Weak transcription Liver Liver
41 chr1:179026000-179033000 Weak transcription Fetal Brain Female brain
42 chr1:179026000-179033200 Weak transcription Primary T regulatory cells fromperipheralblood blood
43 chr1:179026000-179033200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
44 chr1:179026200-179032400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
45 chr1:179026200-179032600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
46 chr1:179026200-179033000 Weak transcription Cortex derived primary cultured neurospheres brain
47 chr1:179026200-179033000 Weak transcription Fetal Lung lung
48 chr1:179026200-179033000 Weak transcription Monocytes-CD14+_RO01746 blood
49 chr1:179026200-179038400 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
50 chr1:179026800-179032800 Weak transcription Primary T helper cells fromperipheralblood blood

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Last update: Aug 31, 2015