The 2.0 version of rSNPBase

Variant report

Variant rs12091355
Chromosome Location chr1:178986279-178986280
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:81 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:178978600-178991000 Weak transcription Aorta Aorta
2 chr1:178978600-178991200 Weak transcription Psoas Muscle Psoas
3 chr1:178984600-178986600 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
4 chr1:178985000-178986400 Enhancers Rectal Mucosa Donor 31 rectum
5 chr1:178985000-178987200 Enhancers Primary monocytes fromperipheralblood blood
6 chr1:178985200-178986600 Enhancers Fetal Muscle Trunk muscle
7 chr1:178985400-178986400 Enhancers Colonic Mucosa Colon
8 chr1:178985400-178986400 Enhancers Stomach Mucosa stomach
9 chr1:178985400-178987000 Flanking Active TSS Monocytes-CD14+_RO01746 blood
10 chr1:178985400-178987200 Enhancers Placenta Amnion Placenta Amnion
11 chr1:178985400-178987400 Enhancers Cortex derived primary cultured neurospheres brain
12 chr1:178985400-178987400 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
13 chr1:178985400-178988200 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
14 chr1:178985400-178988200 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
15 chr1:178985600-178986400 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
16 chr1:178985600-178986400 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
17 chr1:178985600-178986400 Enhancers Primary T cells effector/memory enriched fromperipheralblood blood
18 chr1:178985600-178986400 Enhancers Primary mononuclear cells fromperipheralblood Blood
19 chr1:178985600-178986400 Enhancers Adipose Nuclei Adipose
20 chr1:178985600-178986400 Enhancers Duodenum Smooth Muscle Duodenum
21 chr1:178985600-178986400 Enhancers Esophagus oesophagus
22 chr1:178985600-178986400 Enhancers Fetal Intestine Large intestine
23 chr1:178985600-178986400 Enhancers Fetal Intestine Small intestine
24 chr1:178985600-178986400 Enhancers Fetal Stomach stomach
25 chr1:178985600-178986400 Enhancers Gastric stomach
26 chr1:178985600-178986400 Enhancers Lung lung
27 chr1:178985600-178986400 Enhancers Stomach Smooth Muscle stomach
28 chr1:178985600-178986400 Enhancers HSMM muscle
29 chr1:178985600-178986400 Enhancers NHLF lung
30 chr1:178985600-178986600 Enhancers Primary hematopoietic stem cells short term culture blood
31 chr1:178985600-178986600 Enhancers Sigmoid Colon Sigmoid Colon
32 chr1:178985600-178987000 Enhancers Foreskin Fibroblast Primary Cells skin02 Skin
33 chr1:178985600-178987400 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
34 chr1:178985600-178987400 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
35 chr1:178985600-178987400 Enhancers Brain Inferior Temporal Lobe brain
36 chr1:178985600-178987400 Enhancers Left Ventricle heart
37 chr1:178985600-178987400 Enhancers HMEC breast
38 chr1:178985600-178987600 Enhancers Fetal Muscle Leg muscle
39 chr1:178985600-178987600 Enhancers Ovary ovary
40 chr1:178985600-178987600 Flanking Active TSS K562 blood
41 chr1:178985600-178988600 Enhancers Foreskin Melanocyte Primary Cells skin01 Skin
42 chr1:178985800-178986400 Enhancers Primary hematopoietic stem cells blood
43 chr1:178985800-178986400 Enhancers Brain Hippocampus Middle brain
44 chr1:178985800-178986600 Enhancers iPS-15b Cell Line embryonic stem cell
45 chr1:178985800-178987400 Enhancers Brain Angular Gyrus brain
46 chr1:178985800-178987400 Enhancers Fetal Heart heart
47 chr1:178986000-178986400 Flanking Active TSS Duodenum Mucosa Duodenum
48 chr1:178986000-178986400 ZNF genes & repeats Right Atrium heart
49 chr1:178986000-178986600 Enhancers H1 Derived Mesenchymal Stem Cells ES cell derived
50 chr1:178986000-178986600 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Female --

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Last update: Aug 31, 2015