Variant report

Variant	rs16853619
Chromosome Location	chr1:179043939-179043940
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:178994514..178996787-chr1:179040850..179044332,3	MCF-7	breast:
2	chr1:179035309..179037468-chr1:179043936..179046736,2	K562	blood:

Variant related genes	Relation type
ENSG00000116199	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10157463	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10158768	0.83[ASN][1000 genomes]
rs10913675	0.94[ASN][1000 genomes]
rs10913687	1.00[CHB][hapmap];0.92[YRI][hapmap];0.83[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs11801262	0.81[EUR][1000 genomes]
rs11802142	1.00[GIH][hapmap];0.90[EUR][1000 genomes]
rs11804174	0.90[EUR][1000 genomes]
rs11808217	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[YRI][hapmap];0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12064695	0.81[AMR][1000 genomes]
rs12066589	0.84[CHB][hapmap];0.92[YRI][hapmap];0.94[ASN][1000 genomes]
rs12067262	0.94[ASN][1000 genomes]
rs12071751	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[YRI][hapmap];0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12075028	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12076957	0.84[CHB][hapmap];0.94[ASN][1000 genomes]
rs12079974	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12083856	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12086225	0.95[ASN][1000 genomes]
rs12088051	0.81[YRI][hapmap]
rs12089188	0.94[ASN][1000 genomes]
rs12091355	0.92[ASN][1000 genomes]
rs12143004	0.81[CHD][hapmap]
rs16853551	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17277358	0.89[CHD][hapmap]
rs17361990	0.89[CHD][hapmap];1.00[JPT][hapmap]
rs2274228	0.86[ASN][1000 genomes]
rs2274230	0.89[CHD][hapmap]
rs3766631	0.84[CHB][hapmap];0.94[ASN][1000 genomes]
rs3766633	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[CHD][hapmap];0.88[LWK][hapmap];0.98[MKK][hapmap];0.92[YRI][hapmap];0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3766634	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[YRI][hapmap];0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs45499094	0.86[ASN][1000 genomes]
rs57215421	0.97[ASN][1000 genomes]
rs58726191	0.94[ASN][1000 genomes]
rs6425515	0.85[YRI][hapmap]
rs72707289	0.81[EUR][1000 genomes]
rs72707290	0.81[EUR][1000 genomes]
rs72707297	0.90[EUR][1000 genomes]
rs72709407	0.90[EUR][1000 genomes]
rs72709410	0.90[EUR][1000 genomes]
rs72709411	0.90[EUR][1000 genomes]
rs72709420	0.90[EUR][1000 genomes]
rs72709430	0.90[EUR][1000 genomes]
rs72709434	0.90[EUR][1000 genomes]
rs72709443	0.90[EUR][1000 genomes]
rs7516491	1.00[CHB][hapmap];0.89[CHD][hapmap];0.95[ASN][1000 genomes]
rs7519023	0.95[ASN][1000 genomes]
rs7527432	0.82[YRI][hapmap]
rs7552470	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9725888	0.83[ASW][hapmap];0.84[CHB][hapmap];1.00[CHD][hapmap];0.91[LWK][hapmap];0.92[YRI][hapmap];0.90[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs9726948	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9730271	0.83[ASN][1000 genomes]

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:179008600-179049800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr1:179008600-179049800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr1:179009600-179050400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr1:179025000-179050200	Weak transcription	HUVEC	blood vessel
5	chr1:179025400-179050600	Weak transcription	Fetal Brain Male	brain
6	chr1:179025600-179050000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr1:179025600-179050400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr1:179025800-179050200	Weak transcription	Fetal Heart	heart
9	chr1:179027800-179050600	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr1:179028600-179050000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr1:179028600-179050600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr1:179033800-179050000	Weak transcription	Esophagus	oesophagus
13	chr1:179034000-179050000	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr1:179034200-179050000	Weak transcription	Colonic Mucosa	Colon
15	chr1:179034200-179050000	Weak transcription	Fetal Kidney	kidney
16	chr1:179035400-179050000	Weak transcription	Fetal Lung	lung
17	chr1:179036000-179046800	Weak transcription	NHLF	lung
18	chr1:179036200-179046400	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr1:179036200-179049200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
20	chr1:179036200-179050200	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr1:179036200-179050800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr1:179036400-179049200	Weak transcription	Primary T helper cells PMA-I stimulated	--
23	chr1:179036400-179050000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
24	chr1:179036400-179050200	Weak transcription	Stomach Mucosa	stomach
25	chr1:179036400-179050400	Weak transcription	Right Ventricle	heart
26	chr1:179038400-179049800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr1:179038400-179049800	Weak transcription	HepG2	liver
28	chr1:179038600-179050000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr1:179039600-179045200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr1:179040000-179045000	Strong transcription	Monocytes-CD14+_RO01746	blood
31	chr1:179040600-179046200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr1:179041000-179044200	Strong transcription	Fetal Intestine Small	intestine
33	chr1:179041000-179044200	Strong transcription	Thymus	Thymus
34	chr1:179041000-179046400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
35	chr1:179041200-179044000	Strong transcription	Brain Cingulate Gyrus	brain
36	chr1:179041600-179046200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr1:179041600-179050000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
38	chr1:179041600-179050000	Weak transcription	Colon Smooth Muscle	Colon
39	chr1:179041600-179050000	Weak transcription	Sigmoid Colon	Sigmoid Colon
40	chr1:179041600-179050000	Weak transcription	NHEK	skin
41	chr1:179041600-179050200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr1:179041600-179050200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
43	chr1:179041600-179050200	Weak transcription	Brain Substantia Nigra	brain
44	chr1:179041600-179050200	Weak transcription	Fetal Stomach	stomach
45	chr1:179041600-179050600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr1:179041600-179050600	Weak transcription	Lung	lung
47	chr1:179041800-179048200	Weak transcription	Liver	Liver
48	chr1:179041800-179049600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
49	chr1:179041800-179049800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
50	chr1:179041800-179049800	Weak transcription	Pancreas	Pancrea

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