The 2.0 version of rSNPBase

Variant report

Variant rs72707289
Chromosome Location chr1:179004991-179004992
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:111 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:178996200-179009200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
2 chr1:178996400-179006200 Weak transcription Fetal Stomach stomach
3 chr1:178996400-179011200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
4 chr1:178997000-179005800 Weak transcription Brain Substantia Nigra brain
5 chr1:178998200-179008600 Enhancers Colon Smooth Muscle Colon
6 chr1:178998400-179027400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
7 chr1:178998600-179006000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
8 chr1:178998600-179007600 Weak transcription Brain Cingulate Gyrus brain
9 chr1:178998600-179008000 Weak transcription Placenta Placenta
10 chr1:178998800-179005800 Weak transcription Brain Angular Gyrus brain
11 chr1:178999000-179009600 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
12 chr1:179000000-179006200 Weak transcription Fetal Intestine Small intestine
13 chr1:179001200-179008600 Enhancers Primary B cells from peripheral blood blood
14 chr1:179001200-179009600 Enhancers Fetal Adrenal Gland Adrenal Gland
15 chr1:179001400-179007600 Weak transcription Fetal Brain Female brain
16 chr1:179001600-179017000 Weak transcription Pancreatic Islets Pancreatic Islet
17 chr1:179001800-179008600 Enhancers Primary T helper cells PMA-I stimulated --
18 chr1:179001800-179016200 Weak transcription Aorta Aorta
19 chr1:179002000-179019200 Weak transcription Adipose Nuclei Adipose
20 chr1:179002200-179005800 Weak transcription Breast Myoepithelial Primary Cells Breast
21 chr1:179002200-179007600 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
22 chr1:179002800-179005000 Enhancers Small Intestine intestine
23 chr1:179002800-179008600 Enhancers Primary T helper cells fromperipheralblood blood
24 chr1:179003000-179005200 Enhancers Primary Natural Killer cells fromperipheralblood blood
25 chr1:179003000-179005200 Enhancers Left Ventricle heart
26 chr1:179003200-179005000 Enhancers Primary T killer naive cells fromperipheralblood blood
27 chr1:179003200-179005000 Enhancers Sigmoid Colon Sigmoid Colon
28 chr1:179003200-179005000 Genic enhancers K562 blood
29 chr1:179003200-179005200 Enhancers Primary T cells fromperipheralblood blood
30 chr1:179003200-179008600 Enhancers Primary T killer memory cells from peripheral blood blood
31 chr1:179003400-179007200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
32 chr1:179003600-179006000 Weak transcription Esophagus oesophagus
33 chr1:179003600-179007200 Weak transcription Ovary ovary
34 chr1:179003600-179009200 Weak transcription Right Ventricle heart
35 chr1:179003800-179005200 Weak transcription Brain Hippocampus Middle brain
36 chr1:179003800-179005600 Weak transcription NHEK skin
37 chr1:179003800-179006000 Weak transcription Primary mononuclear cells fromperipheralblood Blood
38 chr1:179003800-179011200 Weak transcription Thymus Thymus
39 chr1:179003800-179025800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
40 chr1:179004000-179005800 Weak transcription HMEC breast
41 chr1:179004000-179007600 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
42 chr1:179004000-179008000 Enhancers NHDF-Ad bronchial
43 chr1:179004000-179011000 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
44 chr1:179004200-179005800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
45 chr1:179004200-179005800 Weak transcription Primary T regulatory cells fromperipheralblood blood
46 chr1:179004200-179005800 Weak transcription HUVEC blood vessel
47 chr1:179004200-179006200 Weak transcription HSMMtube muscle
48 chr1:179004200-179006400 Flanking Active TSS GM12878-XiMat blood
49 chr1:179004200-179007600 Weak transcription HUES48 Cell Line embryonic stem cell
50 chr1:179004200-179007600 Weak transcription iPS-15b Cell Line embryonic stem cell

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Last update: Aug 31, 2015