The 2.0 version of rSNPBase

Variant report

Variant rs11811569
Chromosome Location chr1:179059716-179059717
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:125 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:179052200-179062200 Weak transcription Small Intestine intestine
2 chr1:179052400-179060000 Weak transcription Brain Angular Gyrus brain
3 chr1:179052400-179060200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
4 chr1:179052400-179060800 Weak transcription Fetal Lung lung
5 chr1:179052400-179062600 Weak transcription Fetal Kidney kidney
6 chr1:179052600-179064200 Weak transcription Fetal Brain Male brain
7 chr1:179053000-179060400 Strong transcription Stomach Smooth Muscle stomach
8 chr1:179053000-179072200 Strong transcription Primary T cells from cord blood blood
9 chr1:179053200-179062400 Weak transcription Primary T killer memory cells from peripheral blood blood
10 chr1:179053200-179063000 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
11 chr1:179053200-179064000 Weak transcription Primary T killer naive cells fromperipheralblood blood
12 chr1:179053200-179067600 Strong transcription Primary hematopoietic stem cells short term culture blood
13 chr1:179053200-179071000 Strong transcription NHEK skin
14 chr1:179053200-179096000 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
15 chr1:179053400-179062000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
16 chr1:179053400-179062200 Weak transcription Stomach Mucosa stomach
17 chr1:179053400-179067400 Strong transcription Fetal Intestine Small intestine
18 chr1:179053600-179060000 Strong transcription A549 lung
19 chr1:179053800-179059800 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung
20 chr1:179053800-179060400 Strong transcription Fetal Stomach stomach
21 chr1:179053800-179060600 Strong transcription Brain Dorsolateral Prefrontal Cortex brain
22 chr1:179053800-179066600 Strong transcription Sigmoid Colon Sigmoid Colon
23 chr1:179053800-179066800 Strong transcription Primary T regulatory cells fromperipheralblood blood
24 chr1:179053800-179067200 Strong transcription Thymus Thymus
25 chr1:179053800-179069000 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
26 chr1:179053800-179074600 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
27 chr1:179054000-179067600 Strong transcription Fetal Intestine Large intestine
28 chr1:179054000-179071000 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
29 chr1:179054000-179074800 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
30 chr1:179054000-179077200 Weak transcription Primary T helper naive cells from peripheral blood blood
31 chr1:179054000-179079400 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
32 chr1:179054400-179067200 Strong transcription Ganglion Eminence derived primary cultured neurospheres brain
33 chr1:179054400-179067800 Strong transcription Primary mononuclear cells fromperipheralblood Blood
34 chr1:179054600-179059800 Strong transcription Osteobl bone
35 chr1:179054600-179066600 Strong transcription Fetal Brain Female brain
36 chr1:179054600-179067200 Strong transcription Rectal Mucosa Donor 31 rectum
37 chr1:179054800-179065600 Strong transcription Primary T helper naive cells fromperipheralblood blood
38 chr1:179054800-179066800 Strong transcription Primary T cells fromperipheralblood blood
39 chr1:179054800-179067200 Strong transcription Cortex derived primary cultured neurospheres brain
40 chr1:179054800-179067600 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
41 chr1:179054800-179067800 Strong transcription Brain Germinal Matrix brain
42 chr1:179054800-179072200 Strong transcription Breast Myoepithelial Primary Cells Breast
43 chr1:179055400-179060600 Weak transcription Aorta Aorta
44 chr1:179055400-179060800 Weak transcription Placenta Amnion Placenta Amnion
45 chr1:179055600-179059800 Weak transcription Left Ventricle heart
46 chr1:179055800-179066400 Strong transcription Primary T cells effector/memory enriched fromperipheralblood blood
47 chr1:179056000-179060000 Genic enhancers Primary B cells from peripheral blood blood
48 chr1:179056000-179065800 Strong transcription Primary T helper 17 cells PMA-I stimulated --
49 chr1:179056200-179061400 Genic enhancers Spleen Spleen
50 chr1:179056200-179066400 Strong transcription Primary T helper cells fromperipheralblood blood

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Last update: Aug 31, 2015