Variant report

Variant	rs72713501
Chromosome Location	chr1:179257375-179257376
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:179247878..179250453-chr1:179256970..179259849,2	MCF-7	breast:
2	chr1:179254343..179259872-chr1:179260262..179264377,6	K562	blood:

Variant related genes	Relation type
ENSG00000057252	Chromatin interaction

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs11799509	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11802378	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11807230	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11807239	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11807253	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11809032	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11811569	1.00[ASN][1000 genomes]
rs2636273	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2816182	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28913876	1.00[ASN][1000 genomes]
rs28913894	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28914473	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28991582	1.00[ASN][1000 genomes]
rs28991583	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28991584	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72709443	1.00[ASN][1000 genomes]
rs72709451	1.00[ASN][1000 genomes]
rs72709459	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72709462	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72709463	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72709464	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72709467	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72709474	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72709475	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72709476	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72709477	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72709479	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72709481	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72709485	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72709486	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72709487	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72709488	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72709490	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72709492	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72709493	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72709494	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72709495	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72709496	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72709497	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72709498	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72711608	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72711609	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72711612	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72711614	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72711615	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72713484	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72713485	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72713494	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72715506	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72715515	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72715520	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72715533	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72715595	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72715597	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72715599	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005278	chr1:179197645-179371395	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:179256000-179258600	Enhancers	Fetal Intestine Small	intestine
2	chr1:179256200-179258600	Enhancers	Stomach Mucosa	stomach
3	chr1:179256400-179258800	Enhancers	Fetal Intestine Large	intestine
4	chr1:179256600-179257600	Weak transcription	Pancreas	Pancrea
5	chr1:179256600-179257600	Flanking Active TSS	A549	lung
6	chr1:179256600-179257800	Enhancers	Fetal Kidney	kidney
7	chr1:179256600-179258400	Enhancers	Liver	Liver
8	chr1:179256600-179258800	Enhancers	Rectal Mucosa Donor 31	rectum
9	chr1:179256600-179258800	Enhancers	HepG2	liver
10	chr1:179256800-179257400	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
11	chr1:179256800-179257400	Active TSS	Rectal Mucosa Donor 29	rectum
12	chr1:179257000-179257600	Active TSS	Duodenum Mucosa	Duodenum
13	chr1:179257000-179257800	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr1:179257000-179258000	Weak transcription	Colonic Mucosa	Colon
15	chr1:179257000-179258000	Weak transcription	Placenta	Placenta

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