The 2.0 version of rSNPBase

Variant report

Variant rs72709492
Chromosome Location chr1:179190122-179190123
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:103 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:179139400-179196800 Weak transcription Pancreas Pancrea
2 chr1:179157400-179197400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
3 chr1:179157400-179197600 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
4 chr1:179169000-179197400 Weak transcription NHEK skin
5 chr1:179170200-179197200 Weak transcription Fetal Intestine Large intestine
6 chr1:179176200-179195800 Weak transcription Colon Smooth Muscle Colon
7 chr1:179176200-179195800 Weak transcription Rectal Mucosa Donor 31 rectum
8 chr1:179176200-179196600 Weak transcription Primary T helper naive cells from peripheral blood blood
9 chr1:179176200-179197600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
10 chr1:179176400-179196200 Weak transcription Duodenum Smooth Muscle Duodenum
11 chr1:179176400-179197000 Weak transcription Fetal Brain Male brain
12 chr1:179176400-179197400 Weak transcription Fetal Lung lung
13 chr1:179176400-179197600 Weak transcription Left Ventricle heart
14 chr1:179176600-179196200 Weak transcription Brain Hippocampus Middle brain
15 chr1:179177000-179196000 Weak transcription Fetal Brain Female brain
16 chr1:179177000-179197600 Weak transcription HSMMtube muscle
17 chr1:179177400-179197200 Weak transcription Brain Germinal Matrix brain
18 chr1:179177800-179196600 Weak transcription Pancreatic Islets Pancreatic Islet
19 chr1:179178000-179196000 Weak transcription Aorta Aorta
20 chr1:179178000-179197600 Weak transcription Gastric stomach
21 chr1:179178400-179197600 Weak transcription HUES64 Cell Line embryonic stem cell
22 chr1:179178600-179197600 Weak transcription HUES6 Cell Line embryonic stem cell
23 chr1:179178600-179197600 Weak transcription NH-A brain
24 chr1:179178800-179197400 Weak transcription ES-I3 Cell Line embryonic stem cell
25 chr1:179179200-179196000 Weak transcription Sigmoid Colon Sigmoid Colon
26 chr1:179179200-179197400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
27 chr1:179179800-179197200 Weak transcription Thymus Thymus
28 chr1:179180200-179197600 Weak transcription iPS-18 Cell Line embryonic stem cell
29 chr1:179180800-179197200 Weak transcription Stomach Smooth Muscle stomach
30 chr1:179181600-179197600 Weak transcription Breast Myoepithelial Primary Cells Breast
31 chr1:179183200-179196000 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
32 chr1:179183400-179193000 Weak transcription Fetal Muscle Leg muscle
33 chr1:179184200-179196800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
34 chr1:179184400-179193400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
35 chr1:179184400-179197600 Weak transcription Fetal Thymus thymus
36 chr1:179184600-179196200 Weak transcription Primary T helper 17 cells PMA-I stimulated --
37 chr1:179184600-179196600 Weak transcription Primary T killer memory cells from peripheral blood blood
38 chr1:179184800-179197600 Weak transcription HMEC breast
39 chr1:179185200-179194200 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
40 chr1:179185400-179197400 Weak transcription Cortex derived primary cultured neurospheres brain
41 chr1:179185600-179196400 Weak transcription Brain Cingulate Gyrus brain
42 chr1:179185600-179197600 Weak transcription HUES48 Cell Line embryonic stem cell
43 chr1:179185800-179197600 Weak transcription Primary mononuclear cells fromperipheralblood Blood
44 chr1:179186200-179194400 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
45 chr1:179186400-179193800 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
46 chr1:179186400-179194600 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
47 chr1:179186600-179197600 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
48 chr1:179186800-179191600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
49 chr1:179187200-179196400 Weak transcription Primary T regulatory cells fromperipheralblood blood
50 chr1:179187400-179194200 Weak transcription Duodenum Mucosa Duodenum

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Last update: Aug 31, 2015