The 2.0 version of rSNPBase

Variant report

Variant rs72709485
Chromosome Location chr1:179179280-179179281
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:63 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:179117800-179186000 Weak transcription Fetal Stomach stomach
2 chr1:179122000-179189400 Weak transcription Primary B cells from cord blood blood
3 chr1:179139400-179196800 Weak transcription Pancreas Pancrea
4 chr1:179148000-179186000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
5 chr1:179148400-179185800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
6 chr1:179150800-179180400 Weak transcription Breast Myoepithelial Primary Cells Breast
7 chr1:179157400-179197400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
8 chr1:179157400-179197600 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
9 chr1:179160200-179186800 Weak transcription Primary hematopoietic stem cells blood
10 chr1:179160800-179188000 Weak transcription Primary T helper cells fromperipheralblood blood
11 chr1:179169000-179197400 Weak transcription NHEK skin
12 chr1:179169600-179181200 Weak transcription GM12878-XiMat blood
13 chr1:179170200-179184000 Weak transcription Fetal Intestine Small intestine
14 chr1:179170200-179197200 Weak transcription Fetal Intestine Large intestine
15 chr1:179171800-179186600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
16 chr1:179172200-179186600 Weak transcription Primary hematopoietic stem cells short term culture blood
17 chr1:179172800-179189800 Weak transcription Primary T cells from cord blood blood
18 chr1:179173000-179187600 Weak transcription Small Intestine intestine
19 chr1:179174800-179184000 Weak transcription Primary T cells fromperipheralblood blood
20 chr1:179174800-179186600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
21 chr1:179175200-179189200 Weak transcription Primary T helper cells PMA-I stimulated --
22 chr1:179176000-179179400 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
23 chr1:179176200-179185000 Weak transcription Brain Cingulate Gyrus brain
24 chr1:179176200-179186800 Weak transcription Duodenum Mucosa Duodenum
25 chr1:179176200-179187000 Weak transcription NHDF-Ad bronchial
26 chr1:179176200-179187200 Weak transcription Skeletal Muscle Female skeletal muscle
27 chr1:179176200-179195800 Weak transcription Colon Smooth Muscle Colon
28 chr1:179176200-179195800 Weak transcription Rectal Mucosa Donor 31 rectum
29 chr1:179176200-179196600 Weak transcription Primary T helper naive cells from peripheral blood blood
30 chr1:179176200-179197600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
31 chr1:179176400-179187800 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
32 chr1:179176400-179196200 Weak transcription Duodenum Smooth Muscle Duodenum
33 chr1:179176400-179197000 Weak transcription Fetal Brain Male brain
34 chr1:179176400-179197400 Weak transcription Fetal Lung lung
35 chr1:179176400-179197600 Weak transcription Left Ventricle heart
36 chr1:179176600-179196200 Weak transcription Brain Hippocampus Middle brain
37 chr1:179176800-179189400 Weak transcription Brain Inferior Temporal Lobe brain
38 chr1:179177000-179196000 Weak transcription Fetal Brain Female brain
39 chr1:179177000-179197600 Weak transcription HSMMtube muscle
40 chr1:179177400-179197200 Weak transcription Brain Germinal Matrix brain
41 chr1:179177600-179179600 Enhancers K562 blood
42 chr1:179177800-179196600 Weak transcription Pancreatic Islets Pancreatic Islet
43 chr1:179178000-179179800 Enhancers Hela-S3 cervix
44 chr1:179178000-179196000 Weak transcription Aorta Aorta
45 chr1:179178000-179197600 Weak transcription Gastric stomach
46 chr1:179178400-179185800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
47 chr1:179178400-179189400 Weak transcription HepG2 liver
48 chr1:179178400-179189600 Weak transcription Fetal Adrenal Gland Adrenal Gland
49 chr1:179178400-179197600 Weak transcription HUES64 Cell Line embryonic stem cell
50 chr1:179178600-179186200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin

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Last update: Aug 31, 2015