Variant report

Variant	rs72707269
Chromosome Location	chr1:178972180-178972181
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:21)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:21 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:178966164..178968427-chr1:178970243..178973041,3	MCF-7	breast:
2	chr1:178501093..178502409-chr1:178971593..178972763,7	MCF-7	breast:
3	chr1:178511342..178512464-chr1:178971311..178972745,11	MCF-7	breast:
4	chr1:178971085..178972973-chr1:178994744..178996654,2	MCF-7	breast:
5	chr1:158086879..158088286-chr1:178971479..178972427,5	MCF-7	breast:
6	chr1:158094446..158095158-chr1:178971800..178972330,2	MCF-7	breast:
7	chr1:178938079..178939015-chr1:178971973..178972503,2	K562	blood:
8	chr1:158091555..158092064-chr1:178971658..178972242,2	MCF-7	breast:
9	chr1:178743337..178744080-chr1:178971593..178972572,2	MCF-7	breast:
10	chr1:158082999..158084026-chr1:178971630..178972508,5	MCF-7	breast:
11	chr1:178743137..178744258-chr1:178971516..178972713,5	K562	blood:
12	chr1:158082992..158084048-chr1:178971516..178972772,5	MCF-7	breast:
13	chr1:158094423..158095037-chr1:178971848..178972362,2	MCF-7	breast:
14	chr1:178737402..178738141-chr1:178971519..178972316,2	K562	blood:
15	chr1:178966242..178968851-chr1:178970312..178972982,2	K562	blood:
16	chr1:178501284..178502155-chr1:178971551..178972462,4	K562	blood:
17	chr1:178511363..178512099-chr1:178971558..178972469,2	K562	blood:
18	chr1:178511634..178512537-chr1:178971474..178972460,4	MCF-7	breast:
19	chr1:178971546..178972408-chr1:179047999..179048546,2	MCF-7	breast:
20	chr1:178922116..178924751-chr1:178970686..178972866,2	MCF-7	breast:
21	chr1:178971758..178974744-chr1:178976786..178978756,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000116199	Chromatin interaction
ENSG00000213057	Chromatin interaction
ENSG00000184909	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs11799509	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11801262	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11802142	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11804174	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11811569	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11811579	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs28913876	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28913894	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28914473	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs61758794	1.00[ASN][1000 genomes]
rs72707250	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72707270	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72707273	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72707274	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72707275	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72707276	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72707277	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72707289	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72707290	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72707297	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72709407	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72709410	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72709411	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72709420	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72709430	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72709434	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72709443	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72709451	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72709459	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72709462	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72709463	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72709464	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72709467	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72709474	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72709475	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72709476	1.00[ASN][1000 genomes]
rs72709477	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72709479	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72709481	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72709485	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72709486	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72709487	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72709488	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72709490	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv441722	chr1:178953746-178976729	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv825509	chr1:178963180-178975836	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:178970600-178972400	Enhancers	Fetal Muscle Leg	muscle
2	chr1:178970600-178972600	Enhancers	Fetal Muscle Trunk	muscle
3	chr1:178970600-178972600	Enhancers	Fetal Stomach	stomach
4	chr1:178971400-178972200	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr1:178971400-178972200	Enhancers	Ovary	ovary
6	chr1:178971400-178972200	Enhancers	Placenta Amnion	Placenta Amnion
7	chr1:178971400-178972400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr1:178971400-178972400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr1:178971600-178972200	Enhancers	Primary hematopoietic stem cells	blood
10	chr1:178971600-178972200	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr1:178971600-178972200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr1:178971600-178972200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr1:178971600-178972200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr1:178971600-178972200	Enhancers	Brain Substantia Nigra	brain
15	chr1:178971600-178972200	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
16	chr1:178971600-178972200	Enhancers	Fetal Thymus	thymus
17	chr1:178971600-178972200	Enhancers	Right Atrium	heart
18	chr1:178971600-178972200	Flanking Active TSS	Osteobl	bone
19	chr1:178971600-178972400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr1:178971600-178972400	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
21	chr1:178971600-178972400	Flanking Active TSS	Colon Smooth Muscle	Colon
22	chr1:178971600-178972400	Enhancers	Fetal Heart	heart
23	chr1:178971600-178972400	Enhancers	Fetal Lung	lung
24	chr1:178971600-178972400	Enhancers	Placenta	Placenta
25	chr1:178971600-178972400	Enhancers	Lung	lung
26	chr1:178971600-178972400	Flanking Active TSS	Stomach Smooth Muscle	stomach
27	chr1:178971600-178972400	Flanking Active TSS	A549	lung
28	chr1:178971600-178972400	Enhancers	Dnd41	blood
29	chr1:178971600-178972400	Enhancers	NHDF-Ad	bronchial
30	chr1:178971600-178972600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr1:178971600-178972800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr1:178971600-178973000	Enhancers	HSMMtube	muscle
33	chr1:178971600-178973600	Enhancers	Stomach Mucosa	stomach
34	chr1:178971600-178973800	Enhancers	Primary B cells from peripheral blood	blood
35	chr1:178971600-178974600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
36	chr1:178971800-178972200	Active TSS	ES-I3 Cell Line	embryonic stem cell
37	chr1:178971800-178972200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
38	chr1:178971800-178972200	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr1:178971800-178972200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
40	chr1:178971800-178972200	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
41	chr1:178971800-178972200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr1:178971800-178972200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr1:178971800-178972200	Enhancers	Primary monocytes fromperipheralblood	blood
44	chr1:178971800-178972200	Enhancers	Primary B cells from cord blood	blood
45	chr1:178971800-178972200	Enhancers	Muscle Satellite Cultured Cells	--
46	chr1:178971800-178972200	Flanking Active TSS	Adipose Nuclei	Adipose
47	chr1:178971800-178972200	Enhancers	Brain Angular Gyrus	brain
48	chr1:178971800-178972200	Flanking Active TSS	Brain Anterior Caudate	brain
49	chr1:178971800-178972200	Enhancers	Brain Cingulate Gyrus	brain
50	chr1:178971800-178972200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links