The 2.0 version of rSNPBase

Variant report

Variant rs61758794
Chromosome Location chr1:178854330-178854331
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:87 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:178807000-178855400 Weak transcription Primary hematopoietic stem cells blood
2 chr1:178824600-178855400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
3 chr1:178830800-178890000 Weak transcription Primary T helper cells PMA-I stimulated --
4 chr1:178832600-178887800 Weak transcription Esophagus oesophagus
5 chr1:178834000-178858200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
6 chr1:178834800-178855400 Weak transcription Primary T cells from cord blood blood
7 chr1:178837000-178864400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
8 chr1:178837000-178882800 Strong transcription Primary B cells from peripheral blood blood
9 chr1:178837200-178886600 Weak transcription Placenta Placenta
10 chr1:178837600-178888400 Strong transcription Primary B cells from cord blood blood
11 chr1:178840200-178886200 Weak transcription Colonic Mucosa Colon
12 chr1:178840400-178854800 Weak transcription Fetal Muscle Leg muscle
13 chr1:178840400-178855000 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
14 chr1:178840400-178855000 Weak transcription Fetal Stomach stomach
15 chr1:178840400-178860200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
16 chr1:178840400-178865400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
17 chr1:178840400-178868800 Weak transcription Small Intestine intestine
18 chr1:178840400-178885600 Weak transcription Left Ventricle heart
19 chr1:178840600-178866600 Weak transcription Muscle Satellite Cultured Cells --
20 chr1:178840600-178874400 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
21 chr1:178840800-178855600 Weak transcription HUES6 Cell Line embryonic stem cell
22 chr1:178841000-178855400 Weak transcription iPS-18 Cell Line embryonic stem cell
23 chr1:178841200-178877400 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
24 chr1:178841400-178855000 Weak transcription HUES64 Cell Line embryonic stem cell
25 chr1:178841400-178864400 Weak transcription A549 lung
26 chr1:178841600-178856000 Weak transcription Fetal Kidney kidney
27 chr1:178841600-178863200 Weak transcription ES-I3 Cell Line embryonic stem cell
28 chr1:178841800-178863000 Weak transcription Osteobl bone
29 chr1:178841800-178885800 Weak transcription Rectal Smooth Muscle rectum
30 chr1:178841800-178887600 Weak transcription Hela-S3 cervix
31 chr1:178841800-178901800 Weak transcription Stomach Mucosa stomach
32 chr1:178842000-178854800 Weak transcription Rectal Mucosa Donor 29 rectum
33 chr1:178842000-178866600 Weak transcription Cortex derived primary cultured neurospheres brain
34 chr1:178842200-178855200 Weak transcription Duodenum Smooth Muscle Duodenum
35 chr1:178842200-178863000 Weak transcription Duodenum Mucosa Duodenum
36 chr1:178842200-178863400 Weak transcription HUVEC blood vessel
37 chr1:178842200-178864400 Weak transcription Ovary ovary
38 chr1:178842200-178876200 Weak transcription Fetal Adrenal Gland Adrenal Gland
39 chr1:178842400-178854400 Weak transcription HepG2 liver
40 chr1:178842400-178854800 Weak transcription Liver Liver
41 chr1:178842400-178864600 Weak transcription Fetal Heart heart
42 chr1:178842400-178875600 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
43 chr1:178842600-178855200 Weak transcription Primary hematopoietic stem cells short term culture blood
44 chr1:178844800-178855600 Weak transcription H1 Cell Line embryonic stem cell
45 chr1:178845400-178855400 Weak transcription NH-A brain
46 chr1:178846200-178855400 Weak transcription Dnd41 blood
47 chr1:178846600-178859600 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
48 chr1:178847600-178855400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
49 chr1:178847800-178865600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
50 chr1:178848200-178855200 Weak transcription Monocytes-CD14+_RO01746 blood

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Last update: Aug 31, 2015