Variant report

Variant	rs9725888
Chromosome Location	chr1:179042270-179042271
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:178994812..178996811-chr1:179040582..179043210,2	MCF-7	breast:
2	chr1:178994514..178996787-chr1:179040850..179044332,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000116199	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10157463	0.86[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs10158768	0.86[ASN][1000 genomes]
rs10913675	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10913687	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11808217	0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs12066589	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12067262	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12071751	0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs12075028	0.87[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs12076957	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12079974	0.88[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs12080991	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs12083856	0.85[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.94[ASN][1000 genomes]
rs12086225	0.92[ASN][1000 genomes]
rs12088051	0.88[YRI][hapmap]
rs12089188	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12091355	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12143004	0.82[CHB][hapmap];0.81[CHD][hapmap];1.00[JPT][hapmap]
rs16853551	0.94[ASN][1000 genomes]
rs16853619	0.83[ASW][hapmap];0.84[CHB][hapmap];1.00[CHD][hapmap];0.91[LWK][hapmap];0.92[YRI][hapmap];0.90[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs16853696	1.00[MEX][hapmap]
rs17277358	0.85[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap]
rs17361990	0.85[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs17362128	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs2274228	0.88[ASN][1000 genomes]
rs2274230	0.85[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap]
rs3753532	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs3766631	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3766633	0.83[ASW][hapmap];0.85[CHB][hapmap];0.81[CHD][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs3766634	0.85[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs45499094	0.88[ASN][1000 genomes]
rs57215421	0.94[ASN][1000 genomes]
rs58726191	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6425515	0.92[YRI][hapmap]
rs7516491	0.85[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs7519023	0.92[ASN][1000 genomes]
rs7552470	0.94[ASN][1000 genomes]
rs9650997	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs9724754	0.85[CHB][hapmap]
rs9726948	0.85[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.89[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs9730271	0.86[ASN][1000 genomes]

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:179008600-179049800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr1:179008600-179049800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr1:179009600-179050400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr1:179025000-179050200	Weak transcription	HUVEC	blood vessel
5	chr1:179025400-179050600	Weak transcription	Fetal Brain Male	brain
6	chr1:179025600-179050000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr1:179025600-179050400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr1:179025800-179050200	Weak transcription	Fetal Heart	heart
9	chr1:179027800-179042600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr1:179027800-179050600	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr1:179028600-179050000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr1:179028600-179050600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr1:179029600-179043200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr1:179032600-179043200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr1:179032600-179043200	Strong transcription	Fetal Muscle Trunk	muscle
16	chr1:179032800-179043600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr1:179033000-179043600	Strong transcription	Fetal Muscle Leg	muscle
18	chr1:179033800-179042800	Weak transcription	HMEC	breast
19	chr1:179033800-179050000	Weak transcription	Esophagus	oesophagus
20	chr1:179034000-179050000	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr1:179034200-179050000	Weak transcription	Colonic Mucosa	Colon
22	chr1:179034200-179050000	Weak transcription	Fetal Kidney	kidney
23	chr1:179035400-179050000	Weak transcription	Fetal Lung	lung
24	chr1:179036000-179046800	Weak transcription	NHLF	lung
25	chr1:179036200-179046400	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr1:179036200-179049200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
27	chr1:179036200-179050200	Weak transcription	H1 Cell Line	embryonic stem cell
28	chr1:179036200-179050800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr1:179036400-179049200	Weak transcription	Primary T helper cells PMA-I stimulated	--
30	chr1:179036400-179050000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
31	chr1:179036400-179050200	Weak transcription	Stomach Mucosa	stomach
32	chr1:179036400-179050400	Weak transcription	Right Ventricle	heart
33	chr1:179037000-179042400	Strong transcription	Ovary	ovary
34	chr1:179038400-179042800	Weak transcription	HUES6 Cell Line	embryonic stem cell
35	chr1:179038400-179049800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr1:179038400-179049800	Weak transcription	HepG2	liver
37	chr1:179038600-179050000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr1:179039600-179045200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr1:179040000-179045000	Strong transcription	Monocytes-CD14+_RO01746	blood
40	chr1:179040400-179043600	Strong transcription	K562	blood
41	chr1:179040600-179042400	Strong transcription	Cortex derived primary cultured neurospheres	brain
42	chr1:179040600-179042400	Strong transcription	Duodenum Mucosa	Duodenum
43	chr1:179040600-179043200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
44	chr1:179040600-179043200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr1:179040600-179043400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr1:179040600-179043400	Strong transcription	HUES48 Cell Line	embryonic stem cell
47	chr1:179040600-179043600	Strong transcription	Primary B cells from peripheral blood	blood
48	chr1:179040600-179043600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr1:179040600-179043600	Strong transcription	Adipose Nuclei	Adipose
50	chr1:179040600-179043600	Strong transcription	Rectal Mucosa Donor 31	rectum

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