Variant report

Variant	rs11807144
Chromosome Location	chr1:57668279-57668280
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11800032	1.00[ASN][1000 genomes]
rs155294	0.86[GIH][hapmap];0.92[TSI][hapmap]
rs155297	0.86[TSI][hapmap]
rs169100	1.00[ASN][1000 genomes]
rs169101	1.00[ASN][1000 genomes]
rs17115424	1.00[ASN][1000 genomes]
rs34736592	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs59069448	1.00[ASN][1000 genomes]
rs59607912	1.00[ASN][1000 genomes]
rs59936138	1.00[ASN][1000 genomes]
rs60262534	1.00[ASN][1000 genomes]
rs60349301	1.00[ASN][1000 genomes]
rs61257570	1.00[ASN][1000 genomes]
rs6675017	1.00[ASN][1000 genomes]
rs6697858	0.82[YRI][hapmap]
rs72919287	1.00[ASN][1000 genomes]
rs72921356	1.00[ASN][1000 genomes]
rs72921369	1.00[ASN][1000 genomes]
rs932508	0.82[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461628	chr1:57463326-57816489	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv546305	chr1:57463326-57816489	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:57647000-57670600	Weak transcription	Fetal Intestine Small	intestine
2	chr1:57657400-57670200	Weak transcription	Fetal Intestine Large	intestine
3	chr1:57663600-57669800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr1:57664600-57678400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr1:57665200-57670400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr1:57665400-57669200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr1:57665600-57671600	Weak transcription	Fetal Heart	heart
8	chr1:57666600-57668800	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
9	chr1:57667400-57669000	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
10	chr1:57667600-57668400	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
11	chr1:57667600-57668600	Enhancers	Fetal Brain Male	brain
12	chr1:57667600-57669000	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
13	chr1:57667600-57669000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr1:57667800-57670800	Weak transcription	Fetal Brain Female	brain
15	chr1:57668200-57668400	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
16	chr1:57668200-57668600	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
17	chr1:57668200-57668600	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
18	chr1:57668200-57668800	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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