Variant report

Variant	rs59936138
Chromosome Location	chr1:57684335-57684336
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11800032	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11807144	1.00[ASN][1000 genomes]
rs169100	1.00[ASN][1000 genomes]
rs169101	1.00[ASN][1000 genomes]
rs17115424	1.00[ASN][1000 genomes]
rs59069448	1.00[ASN][1000 genomes]
rs59607912	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60262534	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60349301	1.00[ASN][1000 genomes]
rs61257570	1.00[ASN][1000 genomes]
rs6675017	1.00[ASN][1000 genomes]
rs72903213	1.00[AMR][1000 genomes]
rs72903218	1.00[AMR][1000 genomes]
rs72919287	1.00[ASN][1000 genomes]
rs72921356	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72921369	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461628	chr1:57463326-57816489	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv546305	chr1:57463326-57816489	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:57675600-57692600	Weak transcription	Fetal Intestine Large	intestine
2	chr1:57676000-57689800	Weak transcription	Fetal Intestine Small	intestine
3	chr1:57678600-57684600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr1:57679200-57695000	Weak transcription	Fetal Brain Female	brain
5	chr1:57680800-57684800	Enhancers	Fetal Heart	heart
6	chr1:57681800-57684400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr1:57681800-57690000	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr1:57682000-57687800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr1:57682000-57690600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr1:57682200-57690200	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr1:57682600-57686000	Enhancers	K562	blood
12	chr1:57683600-57694800	Weak transcription	Liver	Liver
13	chr1:57684000-57685000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr1:57684000-57695400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr1:57684200-57684600	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr1:57684200-57685400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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