Variant report

Variant	rs6675017
Chromosome Location	chr1:57702780-57702781
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11800032	1.00[ASN][1000 genomes]
rs11807144	1.00[ASN][1000 genomes]
rs169100	1.00[ASN][1000 genomes]
rs169101	1.00[ASN][1000 genomes]
rs17115424	1.00[ASN][1000 genomes]
rs59069448	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59607912	1.00[ASN][1000 genomes]
rs59936138	1.00[ASN][1000 genomes]
rs60262534	1.00[ASN][1000 genomes]
rs60349301	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61257570	1.00[ASN][1000 genomes]
rs72919287	1.00[ASN][1000 genomes]
rs72921356	1.00[ASN][1000 genomes]
rs72921369	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461628	chr1:57463326-57816489	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv546305	chr1:57463326-57816489	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:57701400-57703200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr1:57702200-57702800	Enhancers	Liver	Liver
3	chr1:57702200-57707400	Weak transcription	Fetal Intestine Large	intestine
4	chr1:57702200-57711800	Weak transcription	Fetal Intestine Small	intestine
5	chr1:57702600-57703600	Weak transcription	Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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