Variant report

Variant	rs60262534
Chromosome Location	chr1:57697053-57697054
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11800032	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11807144	1.00[ASN][1000 genomes]
rs169100	1.00[ASN][1000 genomes]
rs169101	1.00[ASN][1000 genomes]
rs17115424	1.00[ASN][1000 genomes]
rs59069448	1.00[ASN][1000 genomes]
rs59607912	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59936138	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60349301	1.00[ASN][1000 genomes]
rs61257570	1.00[ASN][1000 genomes]
rs6675017	1.00[ASN][1000 genomes]
rs72903213	1.00[AMR][1000 genomes]
rs72903218	1.00[AMR][1000 genomes]
rs72919287	1.00[ASN][1000 genomes]
rs72921356	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72921369	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461628	chr1:57463326-57816489	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv546305	chr1:57463326-57816489	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:57694000-57699800	Weak transcription	Fetal Intestine Small	intestine
2	chr1:57695800-57697600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr1:57695800-57698400	Weak transcription	Fetal Intestine Large	intestine
4	chr1:57696200-57698600	Weak transcription	HepG2	liver
5	chr1:57697000-57697200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr1:57697000-57697400	Flanking Active TSS	Liver	Liver
7	chr1:57697000-57698200	Enhancers	K562	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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