Variant report

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MARCH5-1	chr10:94178418-94179363	NONHSAT015654
2	lnc-MARCH5-1	chr10:94178424-94180098	NONHSAT015655

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11186986	1.00[AMR][1000 genomes]
rs11814521	1.00[EUR][1000 genomes]
rs11815736	1.00[EUR][1000 genomes]
rs11819282	1.00[EUR][1000 genomes]
rs12267150	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1889894	1.00[EUR][1000 genomes]
rs6583818	1.00[EUR][1000 genomes]
rs7067733	1.00[EUR][1000 genomes]
rs7069538	1.00[EUR][1000 genomes]
rs7073957	1.00[EUR][1000 genomes]
rs7082686	1.00[EUR][1000 genomes]
rs7087423	1.00[EUR][1000 genomes]
rs7893352	1.00[EUR][1000 genomes]
rs7896688	1.00[EUR][1000 genomes]
rs7898027	1.00[EUR][1000 genomes]
rs7910569	1.00[EUR][1000 genomes]
rs7911751	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7915349	1.00[EUR][1000 genomes]
rs7916011	1.00[EUR][1000 genomes]
rs7917817	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046258	chr10:93866969-94466106	Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv508600	chr10:94115025-94231917	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv975013	chr10:94137766-94200367	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94178400-94180000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr10:94178400-94180200	Enhancers	Placenta	Placenta
3	chr10:94179000-94179600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr10:94179000-94179800	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
5	chr10:94179200-94179600	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
6	chr10:94179200-94179600	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
7	chr10:94179200-94179800	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
8	chr10:94179200-94179800	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr10:94179200-94179800	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
10	chr10:94179200-94180000	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr10:94179200-94180400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr10:94179200-94181000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
13	chr10:94179200-94181000	Enhancers	Placenta Amnion	Placenta Amnion

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