Variant report

Variant	rs7896688
Chromosome Location	chr10:94211896-94211897
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11813643	1.00[EUR][1000 genomes]
rs11814521	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11815736	0.87[MKK][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11819282	1.00[EUR][1000 genomes]
rs12267150	1.00[EUR][1000 genomes]
rs17107514	1.00[AMR][1000 genomes]
rs1889894	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6583818	1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7067733	0.87[MKK][hapmap];0.94[YRI][hapmap];1.00[EUR][1000 genomes]
rs7069538	1.00[EUR][1000 genomes]
rs7073957	1.00[EUR][1000 genomes]
rs7082686	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7087423	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7098638	1.00[EUR][1000 genomes]
rs7893352	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7898027	1.00[EUR][1000 genomes]
rs7910569	1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7911751	1.00[EUR][1000 genomes]
rs7913315	1.00[EUR][1000 genomes]
rs7915349	0.87[MKK][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7916011	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7917817	1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046258	chr10:93866969-94466106	Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv508600	chr10:94115025-94231917	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94200000-94214200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr10:94201600-94214400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr10:94205200-94212800	Weak transcription	Rectal Smooth Muscle	rectum
4	chr10:94205200-94214400	Weak transcription	Right Ventricle	heart
5	chr10:94205600-94214400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr10:94205800-94214400	Weak transcription	Fetal Stomach	stomach
7	chr10:94205800-94221800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr10:94206200-94212200	Weak transcription	HMEC	breast
9	chr10:94206200-94214200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr10:94206200-94214400	Weak transcription	K562	blood
11	chr10:94206400-94213200	Weak transcription	HUVEC	blood vessel
12	chr10:94206400-94214200	Weak transcription	Fetal Intestine Large	intestine
13	chr10:94206400-94214400	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr10:94206400-94222600	Weak transcription	HSMMtube	muscle
15	chr10:94206600-94212000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr10:94206600-94212000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr10:94207000-94212200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr10:94207000-94212400	Weak transcription	Ovary	ovary
19	chr10:94207000-94214400	Weak transcription	Gastric	stomach
20	chr10:94207200-94214400	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr10:94207600-94213200	Weak transcription	Hela-S3	cervix
22	chr10:94207800-94212000	Weak transcription	Primary B cells from peripheral blood	blood
23	chr10:94207800-94213400	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr10:94207800-94214000	Weak transcription	Left Ventricle	heart
25	chr10:94207800-94222000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
26	chr10:94208000-94212000	Weak transcription	Primary B cells from cord blood	blood
27	chr10:94208000-94212000	Weak transcription	Dnd41	blood
28	chr10:94208000-94212200	Weak transcription	HUES48 Cell Line	embryonic stem cell
29	chr10:94208000-94213200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr10:94208000-94214000	Weak transcription	Brain Anterior Caudate	brain
31	chr10:94208000-94214200	Weak transcription	Fetal Lung	lung
32	chr10:94208000-94215600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
33	chr10:94208000-94219800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr10:94208000-94222400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
35	chr10:94208000-94223600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
36	chr10:94208000-94224000	Weak transcription	Fetal Kidney	kidney
37	chr10:94208200-94214400	Weak transcription	Fetal Intestine Small	intestine
38	chr10:94208200-94216800	Weak transcription	Small Intestine	intestine
39	chr10:94208400-94219200	Weak transcription	Colon Smooth Muscle	Colon
40	chr10:94208400-94276800	Weak transcription	Stomach Mucosa	stomach
41	chr10:94208600-94212200	Weak transcription	Fetal Thymus	thymus
42	chr10:94208600-94213200	Weak transcription	Duodenum Smooth Muscle	Duodenum
43	chr10:94208600-94214200	Weak transcription	Spleen	Spleen
44	chr10:94208600-94217000	Weak transcription	NHEK	skin
45	chr10:94209000-94214400	Weak transcription	Pancreas	Pancrea
46	chr10:94209000-94225800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr10:94209200-94213400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
48	chr10:94209200-94214200	Weak transcription	Brain Angular Gyrus	brain
49	chr10:94209200-94214400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
50	chr10:94209200-94216600	Strong transcription	Primary monocytes fromperipheralblood	blood

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