Variant report
| Variant | rs7911751 |
|---|---|
| Chromosome Location | chr10:94173085-94173086 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr10:94173003..94175089-chr10:94175759..94178706,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000232709 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs11186986 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11813643 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11814521 | 1.00[EUR][1000 genomes] |
| rs11815736 | 1.00[EUR][1000 genomes] |
| rs11819282 | 1.00[EUR][1000 genomes] |
| rs12267150 | 0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs1889894 | 1.00[EUR][1000 genomes] |
| rs6583818 | 1.00[EUR][1000 genomes] |
| rs7067733 | 1.00[EUR][1000 genomes] |
| rs7069538 | 1.00[EUR][1000 genomes] |
| rs7073957 | 1.00[EUR][1000 genomes] |
| rs7082686 | 1.00[EUR][1000 genomes] |
| rs7087423 | 1.00[EUR][1000 genomes] |
| rs7893352 | 1.00[EUR][1000 genomes] |
| rs7896688 | 1.00[EUR][1000 genomes] |
| rs7898027 | 1.00[EUR][1000 genomes] |
| rs7910569 | 1.00[EUR][1000 genomes] |
| rs7915349 | 1.00[EUR][1000 genomes] |
| rs7916011 | 1.00[EUR][1000 genomes] |
| rs7917817 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1046258 | chr10:93866969-94466106 | Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 58 gene(s) | inside rSNPs | diseases |
| 2 | nsv508600 | chr10:94115025-94231917 | Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 4 gene(s) | inside rSNPs | diseases |
| 3 | nsv975013 | chr10:94137766-94200367 | Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:94172800-94173200 | Enhancers | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
