Variant report

Variant	rs7916011
Chromosome Location	chr10:94224952-94224953
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11813643	1.00[EUR][1000 genomes]
rs11814521	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11815736	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11819282	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12267150	1.00[EUR][1000 genomes]
rs17107514	1.00[AMR][1000 genomes]
rs1889894	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34662862	0.94[AFR][1000 genomes]
rs58619531	1.00[EUR][1000 genomes]
rs59489651	1.00[EUR][1000 genomes]
rs61274524	1.00[EUR][1000 genomes]
rs61451715	1.00[EUR][1000 genomes]
rs6583818	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7067733	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7069538	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7073957	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7082686	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7087423	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7098638	1.00[EUR][1000 genomes]
rs7100035	1.00[EUR][1000 genomes]
rs7100357	1.00[EUR][1000 genomes]
rs7893352	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7896688	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7898027	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7910569	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7911751	1.00[EUR][1000 genomes]
rs7913315	1.00[EUR][1000 genomes]
rs7915349	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7917817	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046258	chr10:93866969-94466106	Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv508600	chr10:94115025-94231917	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv551924	chr10:94212742-94290484	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv551925	chr10:94224165-94288429	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94208400-94276800	Weak transcription	Stomach Mucosa	stomach
2	chr10:94209000-94225800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr10:94209400-94225800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr10:94209400-94231400	Strong transcription	Duodenum Mucosa	Duodenum
5	chr10:94209800-94234400	Weak transcription	Fetal Heart	heart
6	chr10:94210000-94243000	Weak transcription	Fetal Brain Female	brain
7	chr10:94210400-94231800	Strong transcription	Adipose Nuclei	Adipose
8	chr10:94210400-94235600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr10:94210400-94239200	Weak transcription	Fetal Brain Male	brain
10	chr10:94210600-94231800	Strong transcription	Liver	Liver
11	chr10:94210600-94250000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr10:94211000-94235600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr10:94211200-94225800	Strong transcription	Osteobl	bone
14	chr10:94211400-94225800	Strong transcription	HUES6 Cell Line	embryonic stem cell
15	chr10:94211400-94231800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
16	chr10:94211400-94235600	Strong transcription	Primary T helper cells fromperipheralblood	blood
17	chr10:94211400-94235800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr10:94211400-94253200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr10:94211800-94230600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr10:94212000-94232400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr10:94212200-94225800	Strong transcription	HUES48 Cell Line	embryonic stem cell
22	chr10:94212400-94233800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr10:94212800-94270400	Weak transcription	Pancreatic Islets	Pancreatic Islet
24	chr10:94214200-94226400	Strong transcription	Sigmoid Colon	Sigmoid Colon
25	chr10:94214200-94230400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr10:94214400-94234200	Strong transcription	Fetal Stomach	stomach
27	chr10:94216200-94225000	Weak transcription	NHDF-Ad	bronchial
28	chr10:94217000-94228600	Weak transcription	Esophagus	oesophagus
29	chr10:94217200-94225800	Strong transcription	Primary B cells from peripheral blood	blood
30	chr10:94217200-94232400	Weak transcription	Small Intestine	intestine
31	chr10:94217400-94251800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr10:94217600-94270200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
33	chr10:94217800-94229200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr10:94217800-94230400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
35	chr10:94217800-94245600	Strong transcription	Primary monocytes fromperipheralblood	blood
36	chr10:94218000-94226200	Strong transcription	HUES64 Cell Line	embryonic stem cell
37	chr10:94218000-94245400	Strong transcription	Monocytes-CD14+_RO01746	blood
38	chr10:94218200-94251800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
39	chr10:94218400-94225800	Strong transcription	Primary T helper cells PMA-I stimulated	--
40	chr10:94218400-94230200	Strong transcription	Skeletal Muscle Female	skeletal muscle
41	chr10:94218400-94237800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr10:94218600-94230400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr10:94218600-94230400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr10:94218800-94226000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
45	chr10:94218800-94226200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
46	chr10:94219000-94226200	Strong transcription	Fetal Thymus	thymus
47	chr10:94219000-94229200	Strong transcription	Placenta	Placenta
48	chr10:94219000-94231200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
49	chr10:94219200-94230200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
50	chr10:94219400-94225000	Weak transcription	Brain Angular Gyrus	brain

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