Variant report

Variant	rs58619531
Chromosome Location	chr10:94459748-94459749
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:94459665..94462220-chr10:94463826..94467337,3	K562	blood:
2	chr10:94455458..94457968-chr10:94458625..94460988,4	K562	blood:
3	chr10:94459361..94461445-chr10:94514300..94516299,2	K562	blood:
4	chr10:94459652..94461340-chr10:94585180..94587731,2	K562	blood:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs11813799	1.00[EUR][1000 genomes]
rs11815736	1.00[EUR][1000 genomes]
rs11817277	1.00[EUR][1000 genomes]
rs11819282	1.00[EUR][1000 genomes]
rs1578672	1.00[EUR][1000 genomes]
rs1889894	1.00[EUR][1000 genomes]
rs28590736	1.00[EUR][1000 genomes]
rs55770900	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56057066	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56143704	1.00[EUR][1000 genomes]
rs56310806	1.00[EUR][1000 genomes]
rs57298326	1.00[EUR][1000 genomes]
rs59489651	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61274524	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61451715	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6583818	1.00[EUR][1000 genomes]
rs7067733	1.00[EUR][1000 genomes]
rs7069538	1.00[EUR][1000 genomes]
rs7073957	1.00[EUR][1000 genomes]
rs7082686	1.00[EUR][1000 genomes]
rs7087423	1.00[EUR][1000 genomes]
rs7098638	1.00[EUR][1000 genomes]
rs7100035	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7100357	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73311745	1.00[EUR][1000 genomes]
rs73311751	1.00[EUR][1000 genomes]
rs73311753	1.00[EUR][1000 genomes]
rs74149108	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74149127	1.00[EUR][1000 genomes]
rs7893352	1.00[EUR][1000 genomes]
rs7898027	1.00[EUR][1000 genomes]
rs7910569	1.00[EUR][1000 genomes]
rs7913315	1.00[EUR][1000 genomes]
rs7915349	1.00[EUR][1000 genomes]
rs7916011	1.00[EUR][1000 genomes]
rs7917817	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046258	chr10:93866969-94466106	Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	esv3446249	chr10:94374508-94549394	Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	esv1794949	chr10:94392728-94465559	Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv825517	chr10:94397149-94472509	Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	nsv825518	chr10:94403446-94467700	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
6	nsv895896	chr10:94429526-94460650	Weak transcription Bivalent/Poised TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
7	nsv895897	chr10:94430068-94460650	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94456200-94462600	Weak transcription	Gastric	stomach
2	chr10:94458200-94460800	Enhancers	HepG2	liver
3	chr10:94458800-94459800	Bivalent/Poised TSS	NHEK	skin
4	chr10:94459000-94459800	Bivalent/Poised TSS	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr10:94459000-94459800	Active TSS	Breast Myoepithelial Primary Cells	Breast
6	chr10:94459000-94459800	Bivalent/Poised TSS	Brain Angular Gyrus	brain
7	chr10:94459000-94459800	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
8	chr10:94459000-94460000	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
9	chr10:94459000-94460000	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr10:94459000-94460000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr10:94459000-94460000	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
12	chr10:94459000-94460000	Flanking Active TSS	Primary B cells from cord blood	blood
13	chr10:94459000-94460000	Flanking Active TSS	Primary B cells from peripheral blood	blood
14	chr10:94459000-94460000	Flanking Active TSS	Primary hematopoietic stem cells	blood
15	chr10:94459000-94460000	Flanking Bivalent TSS/Enh	Primary T helper cells PMA-I stimulated	--
16	chr10:94459000-94460000	Flanking Bivalent TSS/Enh	Primary Natural Killer cells fromperipheralblood	blood
17	chr10:94459000-94460000	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr10:94459000-94460000	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr10:94459000-94460000	Bivalent/Poised TSS	Fetal Brain Female	brain
20	chr10:94459000-94460000	Flanking Bivalent TSS/Enh	Fetal Thymus	thymus
21	chr10:94459000-94460000	Bivalent/Poised TSS	Psoas Muscle	Psoas
22	chr10:94459000-94460000	Bivalent/Poised TSS	Rectal Mucosa Donor 29	rectum
23	chr10:94459000-94460000	Bivalent Enhancer	Small Intestine	intestine
24	chr10:94459000-94460000	Enhancers	Spleen	Spleen
25	chr10:94459000-94460000	Active TSS	HSMM	muscle
26	chr10:94459000-94460000	Active TSS	Osteobl	bone
27	chr10:94459000-94460200	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
28	chr10:94459000-94460200	Bivalent/Poised TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr10:94459000-94460200	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
30	chr10:94459000-94460200	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
31	chr10:94459000-94460200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr10:94459000-94460200	Flanking Active TSS	Primary T cells from cord blood	blood
33	chr10:94459000-94460200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
34	chr10:94459000-94460200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr10:94459000-94460200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr10:94459000-94460200	Flanking Active TSS	Liver	Liver
37	chr10:94459000-94460200	Active TSS	Stomach Smooth Muscle	stomach
38	chr10:94459000-94460200	Flanking Active TSS	HUVEC	blood vessel
39	chr10:94459000-94460200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
40	chr10:94459000-94460400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr10:94459000-94460400	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr10:94459200-94459800	Bivalent/Poised TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
43	chr10:94459200-94459800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr10:94459200-94459800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
45	chr10:94459200-94459800	Flanking Bivalent TSS/Enh	Primary neutrophils fromperipheralblood	blood
46	chr10:94459200-94459800	Flanking Bivalent TSS/Enh	Primary T cells fromperipheralblood	blood
47	chr10:94459200-94459800	Flanking Bivalent TSS/Enh	Primary T helper memory cells from peripheral blood 1	blood
48	chr10:94459200-94459800	Flanking Bivalent TSS/Enh	Primary T cells effector/memory enriched fromperipheralblood	blood
49	chr10:94459200-94459800	Flanking Bivalent TSS/Enh	Primary T killer naive cells fromperipheralblood	blood
50	chr10:94459200-94459800	Bivalent/Poised TSS	Brain Anterior Caudate	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links