Variant report

Variant	rs1578672
Chromosome Location	chr10:94474496-94474497
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SETDB1	chr10:94473417-94474507	U2OS	brain:	n/a	n/a

Variant related genes	Relation type
ENSG00000201412	TF binding region

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11813799	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11815736	1.00[EUR][1000 genomes]
rs11817277	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11819282	1.00[EUR][1000 genomes]
rs1889894	1.00[EUR][1000 genomes]
rs28590736	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55770900	1.00[EUR][1000 genomes]
rs56057066	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56143704	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56310806	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57298326	1.00[EUR][1000 genomes]
rs58619531	1.00[EUR][1000 genomes]
rs59489651	1.00[EUR][1000 genomes]
rs61274524	1.00[EUR][1000 genomes]
rs61451715	1.00[EUR][1000 genomes]
rs6583818	1.00[EUR][1000 genomes]
rs7067733	1.00[EUR][1000 genomes]
rs7069538	1.00[EUR][1000 genomes]
rs7073957	1.00[EUR][1000 genomes]
rs7082686	1.00[EUR][1000 genomes]
rs7087423	1.00[EUR][1000 genomes]
rs7098638	1.00[EUR][1000 genomes]
rs7100035	1.00[EUR][1000 genomes]
rs7100357	1.00[EUR][1000 genomes]
rs73311745	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73311751	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73311753	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74149127	1.00[EUR][1000 genomes]
rs7898027	1.00[EUR][1000 genomes]
rs7910569	1.00[EUR][1000 genomes]
rs7913315	1.00[EUR][1000 genomes]
rs7915349	1.00[EUR][1000 genomes]
rs7917817	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446249	chr10:94374508-94549394	Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94471000-94477200	Enhancers	Primary B cells from cord blood	blood
2	chr10:94471200-94481200	Enhancers	Primary B cells from peripheral blood	blood
3	chr10:94472600-94475600	Weak transcription	Liver	Liver
4	chr10:94474000-94475000	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr10:94474200-94474600	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr10:94474200-94475200	Enhancers	Pancreas	Pancrea

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