Variant report

Variant	rs7069538
Chromosome Location	chr10:94341662-94341663
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:94334190..94336878-chr10:94340281..94341907,2	K562	blood:
2	chr10:94341343..94347435-chr10:94348651..94352489,6	K562	blood:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs11813643	1.00[EUR][1000 genomes]
rs11813799	1.00[EUR][1000 genomes]
rs11814521	1.00[EUR][1000 genomes]
rs11815736	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11817277	1.00[EUR][1000 genomes]
rs11819282	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12267150	1.00[EUR][1000 genomes]
rs1578672	1.00[EUR][1000 genomes]
rs1889894	1.00[EUR][1000 genomes]
rs28590736	1.00[EUR][1000 genomes]
rs34662862	0.89[AFR][1000 genomes]
rs55770900	1.00[EUR][1000 genomes]
rs56057066	1.00[EUR][1000 genomes]
rs56143704	1.00[EUR][1000 genomes]
rs56310806	1.00[EUR][1000 genomes]
rs57298326	1.00[EUR][1000 genomes]
rs58619531	1.00[EUR][1000 genomes]
rs59489651	1.00[EUR][1000 genomes]
rs61274524	1.00[EUR][1000 genomes]
rs61451715	1.00[EUR][1000 genomes]
rs6583818	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7067733	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7073957	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7082686	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7087423	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7098638	1.00[EUR][1000 genomes]
rs7100035	1.00[EUR][1000 genomes]
rs7100357	1.00[EUR][1000 genomes]
rs73311745	1.00[EUR][1000 genomes]
rs73311751	1.00[EUR][1000 genomes]
rs73311753	1.00[EUR][1000 genomes]
rs74149127	1.00[EUR][1000 genomes]
rs7893352	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7896688	1.00[EUR][1000 genomes]
rs7898027	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7910569	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7911751	1.00[EUR][1000 genomes]
rs7913315	1.00[EUR][1000 genomes]
rs7915349	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7916011	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7917817	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046258	chr10:93866969-94466106	Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	esv1792868	chr10:94232247-94409749	Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
3	nsv895894	chr10:94249982-94452430	Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
4	nsv895895	chr10:94304132-94372706	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94336200-94350000	Weak transcription	HepG2	liver
2	chr10:94336400-94350400	Weak transcription	NHEK	skin

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