Variant report

Variant	rs28590736
Chromosome Location	chr10:94469192-94469193
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11813799	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11815736	1.00[EUR][1000 genomes]
rs11817277	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11819282	1.00[EUR][1000 genomes]
rs1578672	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1889894	1.00[EUR][1000 genomes]
rs55770900	1.00[EUR][1000 genomes]
rs56057066	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56143704	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56310806	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57298326	1.00[EUR][1000 genomes]
rs58619531	1.00[EUR][1000 genomes]
rs59489651	1.00[EUR][1000 genomes]
rs61274524	1.00[EUR][1000 genomes]
rs61451715	1.00[EUR][1000 genomes]
rs6583818	1.00[EUR][1000 genomes]
rs7067733	1.00[EUR][1000 genomes]
rs7069538	1.00[EUR][1000 genomes]
rs7073957	1.00[EUR][1000 genomes]
rs7082686	1.00[EUR][1000 genomes]
rs7087423	1.00[EUR][1000 genomes]
rs7098638	1.00[EUR][1000 genomes]
rs7100035	1.00[EUR][1000 genomes]
rs7100357	1.00[EUR][1000 genomes]
rs73311745	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73311751	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73311753	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74149127	1.00[EUR][1000 genomes]
rs7898027	1.00[EUR][1000 genomes]
rs7910569	1.00[EUR][1000 genomes]
rs7913315	1.00[EUR][1000 genomes]
rs7915349	1.00[EUR][1000 genomes]
rs7917817	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446249	chr10:94374508-94549394	Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv825517	chr10:94397149-94472509	Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94459800-94474000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:94462400-94473400	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr10:94468600-94471200	Weak transcription	HepG2	liver
4	chr10:94468600-94472400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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