Variant report

Variant	rs59489651
Chromosome Location	chr10:94461859-94461860
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:94459665..94462220-chr10:94463826..94467337,3	K562	blood:
2	chr10:94460041..94464293-chr10:94516357..94518364,3	K562	blood:
3	chr10:94460103..94462180-chr10:94468508..94470499,2	K562	blood:
4	chr10:94459840..94462711-chr10:94586158..94587731,2	K562	blood:
5	chr10:94460041..94462879-chr10:94516559..94518364,2	K562	blood:

Variant related genes	Relation type
ENSG00000201412	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs11813799	1.00[EUR][1000 genomes]
rs11815736	1.00[EUR][1000 genomes]
rs11817277	1.00[EUR][1000 genomes]
rs11819282	1.00[EUR][1000 genomes]
rs1578672	1.00[EUR][1000 genomes]
rs1889894	1.00[EUR][1000 genomes]
rs28590736	1.00[EUR][1000 genomes]
rs55770900	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56057066	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56143704	1.00[EUR][1000 genomes]
rs56310806	1.00[EUR][1000 genomes]
rs57298326	1.00[EUR][1000 genomes]
rs58619531	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61274524	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61451715	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6583818	1.00[EUR][1000 genomes]
rs7067733	1.00[EUR][1000 genomes]
rs7069538	1.00[EUR][1000 genomes]
rs7073957	1.00[EUR][1000 genomes]
rs7082686	1.00[EUR][1000 genomes]
rs7087423	1.00[EUR][1000 genomes]
rs7098638	1.00[EUR][1000 genomes]
rs7100035	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7100357	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73311745	1.00[EUR][1000 genomes]
rs73311751	1.00[EUR][1000 genomes]
rs73311753	1.00[EUR][1000 genomes]
rs74149108	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74149127	1.00[EUR][1000 genomes]
rs7893352	1.00[EUR][1000 genomes]
rs7898027	1.00[EUR][1000 genomes]
rs7910569	1.00[EUR][1000 genomes]
rs7913315	1.00[EUR][1000 genomes]
rs7915349	1.00[EUR][1000 genomes]
rs7916011	1.00[EUR][1000 genomes]
rs7917817	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046258	chr10:93866969-94466106	Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	esv3446249	chr10:94374508-94549394	Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	esv1794949	chr10:94392728-94465559	Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv825517	chr10:94397149-94472509	Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	nsv825518	chr10:94403446-94467700	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94456200-94462600	Weak transcription	Gastric	stomach
2	chr10:94459600-94462200	Weak transcription	Pancreas	Pancrea
3	chr10:94459800-94474000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr10:94460000-94463000	Enhancers	Primary B cells from peripheral blood	blood
5	chr10:94460200-94462000	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr10:94460200-94462000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr10:94460200-94462200	Weak transcription	Liver	Liver
8	chr10:94460200-94462600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr10:94460200-94463200	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr10:94460800-94462000	Weak transcription	Primary hematopoietic stem cells	blood
11	chr10:94460800-94462200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr10:94460800-94462200	Weak transcription	HUVEC	blood vessel
13	chr10:94461000-94462000	Enhancers	Monocytes-CD14+_RO01746	blood
14	chr10:94461000-94462200	Weak transcription	A549	lung
15	chr10:94461400-94462000	Enhancers	Primary monocytes fromperipheralblood	blood
16	chr10:94461400-94462200	Enhancers	Primary B cells from cord blood	blood
17	chr10:94461600-94462000	Enhancers	Dnd41	blood
18	chr10:94461600-94462000	Weak transcription	K562	blood

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