Variant report

Variant	rs11823646
Chromosome Location	chr11:86015703-86015704
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:85982331..85984866-chr11:86014885..86016908,2	MCF-7	breast:
2	chr11:86011825..86015552-chr11:86015581..86017222,3	K562	blood:
3	chr11:86012640..86015311-chr11:86015657..86017221,3	K562	blood:
4	chr11:85374267..85376584-chr11:86013241..86015955,2	MCF-7	breast:
5	chr11:85663607..85666587-chr11:86015226..86016933,2	K562	blood:
6	chr11:85837959..85840215-chr11:86014707..86016987,2	K562	blood:

Variant related genes	Relation type
ENSG00000137504	Chromatin interaction
ENSG00000149196	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11234604	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11822824	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11823516	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11825208	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11827831	0.85[EUR][1000 genomes]
rs2167611	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3758879	0.84[AFR][1000 genomes]
rs57089989	0.93[ASN][1000 genomes]
rs57381996	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57829583	0.85[AFR][1000 genomes]
rs58014336	0.85[EUR][1000 genomes]
rs58563351	0.85[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs60116315	0.87[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs7108053	0.88[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs7115858	0.81[AFR][1000 genomes]
rs7116227	0.81[AFR][1000 genomes]
rs7118858	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7928648	0.88[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs7931249	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7936284	0.85[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs7951478	0.86[AFR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832223	chr11:85845315-86015957	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv508643	chr11:85988577-86047719	Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86014000-86016000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr11:86014000-86026000	Weak transcription	Placenta	Placenta
3	chr11:86014000-86030000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr11:86014000-86030000	Weak transcription	Lung	lung
5	chr11:86014200-86016000	Weak transcription	Fetal Muscle Trunk	muscle
6	chr11:86014200-86024600	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr11:86014200-86024600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr11:86014200-86024800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr11:86014200-86028000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr11:86014200-86030000	Weak transcription	Left Ventricle	heart
11	chr11:86014200-86031600	Weak transcription	Ovary	ovary
12	chr11:86014200-86052000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr11:86014200-86055400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr11:86014200-86057400	Weak transcription	Aorta	Aorta
15	chr11:86014400-86024000	Weak transcription	Fetal Thymus	thymus
16	chr11:86014400-86024400	Weak transcription	Monocytes-CD14+_RO01746	blood
17	chr11:86014400-86024600	Weak transcription	Fetal Muscle Leg	muscle
18	chr11:86014400-86027800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr11:86014400-86030000	Weak transcription	Primary neutrophils fromperipheralblood	blood
20	chr11:86014400-86034400	Weak transcription	HSMM	muscle
21	chr11:86014400-86066600	Weak transcription	HSMMtube	muscle
22	chr11:86014600-86015800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr11:86014600-86015800	Weak transcription	Fetal Intestine Small	intestine
24	chr11:86014600-86016000	Weak transcription	Fetal Stomach	stomach
25	chr11:86014600-86016200	Enhancers	Skeletal Muscle Female	skeletal muscle
26	chr11:86014600-86017000	Weak transcription	HUES48 Cell Line	embryonic stem cell
27	chr11:86014600-86018600	Weak transcription	Stomach Mucosa	stomach
28	chr11:86014600-86024000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
29	chr11:86014600-86024200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr11:86014600-86024400	Weak transcription	Primary hematopoietic stem cells	blood
31	chr11:86014600-86024400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr11:86014600-86024600	Weak transcription	Primary monocytes fromperipheralblood	blood
33	chr11:86014600-86024600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr11:86014600-86024600	Weak transcription	HMEC	breast
35	chr11:86014600-86024800	Weak transcription	Primary B cells from peripheral blood	blood
36	chr11:86014600-86024800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
37	chr11:86014600-86024800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr11:86014600-86024800	Weak transcription	Liver	Liver
39	chr11:86014600-86024800	Weak transcription	Psoas Muscle	Psoas
40	chr11:86014600-86024800	Weak transcription	Rectal Mucosa Donor 29	rectum
41	chr11:86014600-86025000	Weak transcription	Primary B cells from cord blood	blood
42	chr11:86014600-86026600	Weak transcription	Fetal Brain Male	brain
43	chr11:86014600-86026600	Weak transcription	Fetal Intestine Large	intestine
44	chr11:86014600-86026800	Weak transcription	HUES64 Cell Line	embryonic stem cell
45	chr11:86014600-86029800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr11:86014600-86029800	Weak transcription	Rectal Mucosa Donor 31	rectum
47	chr11:86014600-86030000	Weak transcription	HUES6 Cell Line	embryonic stem cell
48	chr11:86014600-86030000	Weak transcription	Fetal Brain Female	brain
49	chr11:86014600-86030000	Weak transcription	Sigmoid Colon	Sigmoid Colon
50	chr11:86014600-86031600	Weak transcription	Fetal Lung	lung

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