Variant report

Variant	rs11822824
Chromosome Location	chr11:86017602-86017603
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11234604	1.00[ASW][hapmap];1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11820048	0.85[CHB][hapmap];1.00[CHD][hapmap];0.87[YRI][hapmap];0.86[ASN][1000 genomes]
rs11820262	0.86[ASN][1000 genomes]
rs11820306	0.86[ASN][1000 genomes]
rs11823516	1.00[CEU][hapmap];0.85[CHB][hapmap];0.82[YRI][hapmap];0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11823646	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11825208	1.00[CEU][hapmap];0.85[CHB][hapmap];0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11827831	0.85[EUR][1000 genomes]
rs2167611	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.90[TSI][hapmap];0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3758879	0.85[CHB][hapmap];0.87[YRI][hapmap];0.84[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs57089989	0.86[ASN][1000 genomes]
rs57381996	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs57829583	0.85[AFR][1000 genomes]
rs58014336	0.85[EUR][1000 genomes]
rs58563351	0.85[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs60116315	0.87[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs7106523	0.85[CHB][hapmap];0.89[JPT][hapmap]
rs7108053	0.88[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs7115858	0.85[CHB][hapmap];1.00[CHD][hapmap];0.82[LWK][hapmap];0.82[MEX][hapmap];0.97[MKK][hapmap];0.87[YRI][hapmap];0.81[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs7116227	0.81[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs7118858	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7129295	0.86[ASN][1000 genomes]
rs7924368	1.00[CHB][hapmap];0.90[JPT][hapmap];0.84[YRI][hapmap]
rs7928648	0.88[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs7931249	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7934320	0.85[CHB][hapmap];1.00[CHD][hapmap]
rs7936284	0.85[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs7951357	0.85[CHB][hapmap];0.90[JPT][hapmap];0.81[TSI][hapmap]
rs7951478	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv508643	chr11:85988577-86047719	Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	esv3331887	chr11:86017029-86020502	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86014000-86026000	Weak transcription	Placenta	Placenta
2	chr11:86014000-86030000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr11:86014000-86030000	Weak transcription	Lung	lung
4	chr11:86014200-86024600	Weak transcription	Primary T cells fromperipheralblood	blood
5	chr11:86014200-86024600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr11:86014200-86024800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr11:86014200-86028000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr11:86014200-86030000	Weak transcription	Left Ventricle	heart
9	chr11:86014200-86031600	Weak transcription	Ovary	ovary
10	chr11:86014200-86052000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr11:86014200-86055400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr11:86014200-86057400	Weak transcription	Aorta	Aorta
13	chr11:86014400-86024000	Weak transcription	Fetal Thymus	thymus
14	chr11:86014400-86024400	Weak transcription	Monocytes-CD14+_RO01746	blood
15	chr11:86014400-86024600	Weak transcription	Fetal Muscle Leg	muscle
16	chr11:86014400-86027800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr11:86014400-86030000	Weak transcription	Primary neutrophils fromperipheralblood	blood
18	chr11:86014400-86034400	Weak transcription	HSMM	muscle
19	chr11:86014400-86066600	Weak transcription	HSMMtube	muscle
20	chr11:86014600-86018600	Weak transcription	Stomach Mucosa	stomach
21	chr11:86014600-86024000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
22	chr11:86014600-86024200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr11:86014600-86024400	Weak transcription	Primary hematopoietic stem cells	blood
24	chr11:86014600-86024400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr11:86014600-86024600	Weak transcription	Primary monocytes fromperipheralblood	blood
26	chr11:86014600-86024600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr11:86014600-86024600	Weak transcription	HMEC	breast
28	chr11:86014600-86024800	Weak transcription	Primary B cells from peripheral blood	blood
29	chr11:86014600-86024800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
30	chr11:86014600-86024800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr11:86014600-86024800	Weak transcription	Liver	Liver
32	chr11:86014600-86024800	Weak transcription	Psoas Muscle	Psoas
33	chr11:86014600-86024800	Weak transcription	Rectal Mucosa Donor 29	rectum
34	chr11:86014600-86025000	Weak transcription	Primary B cells from cord blood	blood
35	chr11:86014600-86026600	Weak transcription	Fetal Brain Male	brain
36	chr11:86014600-86026600	Weak transcription	Fetal Intestine Large	intestine
37	chr11:86014600-86026800	Weak transcription	HUES64 Cell Line	embryonic stem cell
38	chr11:86014600-86029800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr11:86014600-86029800	Weak transcription	Rectal Mucosa Donor 31	rectum
40	chr11:86014600-86030000	Weak transcription	HUES6 Cell Line	embryonic stem cell
41	chr11:86014600-86030000	Weak transcription	Fetal Brain Female	brain
42	chr11:86014600-86030000	Weak transcription	Sigmoid Colon	Sigmoid Colon
43	chr11:86014600-86031600	Weak transcription	Fetal Lung	lung
44	chr11:86014600-86031600	Weak transcription	Stomach Smooth Muscle	stomach
45	chr11:86014600-86035200	Weak transcription	NH-A	brain
46	chr11:86014600-86045600	Weak transcription	H1 Cell Line	embryonic stem cell
47	chr11:86014600-86045800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr11:86014600-86045800	Weak transcription	Right Ventricle	heart
49	chr11:86014600-86048400	Weak transcription	Brain Germinal Matrix	brain
50	chr11:86014600-86048800	Weak transcription	Thymus	Thymus

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