Variant report

Variant	rs60116315
Chromosome Location	chr11:86031490-86031491
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11234604	0.81[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs11822824	0.87[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs11823273	0.83[ASN][1000 genomes]
rs11823516	0.81[EUR][1000 genomes]
rs11823646	0.87[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs11825208	0.85[EUR][1000 genomes]
rs11827831	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2167611	0.85[EUR][1000 genomes]
rs57331254	0.96[ASN][1000 genomes]
rs57381996	0.85[EUR][1000 genomes]
rs57829583	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58014336	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58563351	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7108053	0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7118858	0.83[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs7924368	0.96[ASN][1000 genomes]
rs7928648	0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7931249	0.85[EUR][1000 genomes]
rs7936284	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7951478	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv508643	chr11:85988577-86047719	Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86014200-86031600	Weak transcription	Ovary	ovary
2	chr11:86014200-86052000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr11:86014200-86055400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr11:86014200-86057400	Weak transcription	Aorta	Aorta
5	chr11:86014400-86034400	Weak transcription	HSMM	muscle
6	chr11:86014400-86066600	Weak transcription	HSMMtube	muscle
7	chr11:86014600-86031600	Weak transcription	Fetal Lung	lung
8	chr11:86014600-86031600	Weak transcription	Stomach Smooth Muscle	stomach
9	chr11:86014600-86035200	Weak transcription	NH-A	brain
10	chr11:86014600-86045600	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr11:86014600-86045800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr11:86014600-86045800	Weak transcription	Right Ventricle	heart
13	chr11:86014600-86048400	Weak transcription	Brain Germinal Matrix	brain
14	chr11:86014600-86048800	Weak transcription	Thymus	Thymus
15	chr11:86014600-86049000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr11:86014600-86049800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr11:86014600-86066400	Weak transcription	Fetal Kidney	kidney
18	chr11:86014800-86031600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
19	chr11:86014800-86035800	Weak transcription	Brain Anterior Caudate	brain
20	chr11:86014800-86036000	Weak transcription	Brain Substantia Nigra	brain
21	chr11:86014800-86040600	Weak transcription	Brain Angular Gyrus	brain
22	chr11:86014800-86045800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr11:86014800-86049000	Weak transcription	Hela-S3	cervix
24	chr11:86014800-86049200	Weak transcription	HUVEC	blood vessel
25	chr11:86014800-86058600	Weak transcription	NHLF	lung
26	chr11:86015000-86036000	Weak transcription	Colon Smooth Muscle	Colon
27	chr11:86015000-86046000	Weak transcription	NHEK	skin
28	chr11:86015000-86061000	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr11:86015200-86033000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
30	chr11:86015200-86045800	Weak transcription	Osteobl	bone
31	chr11:86015200-86051400	Weak transcription	Rectal Smooth Muscle	rectum
32	chr11:86015400-86036200	Weak transcription	Pancreatic Islets	Pancreatic Islet
33	chr11:86015400-86045800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
34	chr11:86015400-86048400	Weak transcription	Brain Cingulate Gyrus	brain
35	chr11:86015400-86049000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
36	chr11:86015400-86059600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
37	chr11:86015600-86048600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
38	chr11:86020400-86057200	Weak transcription	Small Intestine	intestine
39	chr11:86022000-86048800	Weak transcription	Gastric	stomach
40	chr11:86022000-86061000	Weak transcription	Esophagus	oesophagus
41	chr11:86023800-86061200	Weak transcription	Brain Inferior Temporal Lobe	brain
42	chr11:86024000-86033800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
43	chr11:86024000-86035000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr11:86024000-86042600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr11:86024200-86052200	Weak transcription	Colonic Mucosa	Colon
46	chr11:86024600-86057400	Weak transcription	Pancreas	Pancrea
47	chr11:86024800-86032000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr11:86025000-86061600	Weak transcription	Psoas Muscle	Psoas
49	chr11:86025200-86032200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr11:86025200-86035800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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