Variant report

Variant	rs7951478
Chromosome Location	chr11:86024858-86024859
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11234604	1.00[CEU][hapmap];0.85[CHB][hapmap];0.89[JPT][hapmap];0.91[YRI][hapmap];0.80[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs11820048	0.85[CHB][hapmap];0.89[JPT][hapmap];0.87[YRI][hapmap]
rs11822824	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs11823273	0.86[ASN][1000 genomes]
rs11823516	1.00[CEU][hapmap];0.85[CHB][hapmap];0.89[JPT][hapmap];0.84[YRI][hapmap];0.81[EUR][1000 genomes]
rs11823646	0.86[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs11825208	1.00[CEU][hapmap];0.85[CHB][hapmap];0.89[JPT][hapmap];0.85[EUR][1000 genomes]
rs11827831	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2167611	1.00[CEU][hapmap];0.85[CHB][hapmap];0.85[EUR][1000 genomes]
rs3758879	0.85[CHB][hapmap];0.89[JPT][hapmap];0.88[YRI][hapmap]
rs57331254	1.00[ASN][1000 genomes]
rs57381996	0.85[EUR][1000 genomes]
rs57829583	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58014336	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58563351	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60116315	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7106523	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs7108053	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7115858	0.85[CHB][hapmap];0.89[JPT][hapmap];0.87[YRI][hapmap]
rs7118858	0.82[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs7924368	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];1.00[ASN][1000 genomes]
rs7928648	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7931249	1.00[CEU][hapmap];0.85[CHB][hapmap];0.89[JPT][hapmap];0.85[EUR][1000 genomes]
rs7934320	0.85[CHB][hapmap]
rs7936284	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7951357	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs7951433	0.90[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv508643	chr11:85988577-86047719	Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86014000-86026000	Weak transcription	Placenta	Placenta
2	chr11:86014000-86030000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr11:86014000-86030000	Weak transcription	Lung	lung
4	chr11:86014200-86028000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr11:86014200-86030000	Weak transcription	Left Ventricle	heart
6	chr11:86014200-86031600	Weak transcription	Ovary	ovary
7	chr11:86014200-86052000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr11:86014200-86055400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr11:86014200-86057400	Weak transcription	Aorta	Aorta
10	chr11:86014400-86027800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr11:86014400-86030000	Weak transcription	Primary neutrophils fromperipheralblood	blood
12	chr11:86014400-86034400	Weak transcription	HSMM	muscle
13	chr11:86014400-86066600	Weak transcription	HSMMtube	muscle
14	chr11:86014600-86025000	Weak transcription	Primary B cells from cord blood	blood
15	chr11:86014600-86026600	Weak transcription	Fetal Brain Male	brain
16	chr11:86014600-86026600	Weak transcription	Fetal Intestine Large	intestine
17	chr11:86014600-86026800	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr11:86014600-86029800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr11:86014600-86029800	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr11:86014600-86030000	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr11:86014600-86030000	Weak transcription	Fetal Brain Female	brain
22	chr11:86014600-86030000	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr11:86014600-86031600	Weak transcription	Fetal Lung	lung
24	chr11:86014600-86031600	Weak transcription	Stomach Smooth Muscle	stomach
25	chr11:86014600-86035200	Weak transcription	NH-A	brain
26	chr11:86014600-86045600	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr11:86014600-86045800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr11:86014600-86045800	Weak transcription	Right Ventricle	heart
29	chr11:86014600-86048400	Weak transcription	Brain Germinal Matrix	brain
30	chr11:86014600-86048800	Weak transcription	Thymus	Thymus
31	chr11:86014600-86049000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
32	chr11:86014600-86049800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr11:86014600-86066400	Weak transcription	Fetal Kidney	kidney
34	chr11:86014800-86026800	Weak transcription	NHDF-Ad	bronchial
35	chr11:86014800-86030000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
36	chr11:86014800-86030400	Weak transcription	A549	lung
37	chr11:86014800-86031600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
38	chr11:86014800-86035800	Weak transcription	Brain Anterior Caudate	brain
39	chr11:86014800-86036000	Weak transcription	Brain Substantia Nigra	brain
40	chr11:86014800-86040600	Weak transcription	Brain Angular Gyrus	brain
41	chr11:86014800-86045800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr11:86014800-86049000	Weak transcription	Hela-S3	cervix
43	chr11:86014800-86049200	Weak transcription	HUVEC	blood vessel
44	chr11:86014800-86058600	Weak transcription	NHLF	lung
45	chr11:86015000-86036000	Weak transcription	Colon Smooth Muscle	Colon
46	chr11:86015000-86046000	Weak transcription	NHEK	skin
47	chr11:86015000-86061000	Weak transcription	Muscle Satellite Cultured Cells	--
48	chr11:86015200-86029600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr11:86015200-86031200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr11:86015200-86033000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood

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