Variant report

Variant	rs57381996
Chromosome Location	chr11:86015320-86015321
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:85982331..85984866-chr11:86014885..86016908,2	MCF-7	breast:
2	chr11:85374267..85376584-chr11:86013241..86015955,2	MCF-7	breast:
3	chr11:85663607..85666587-chr11:86015226..86016933,2	K562	blood:
4	chr11:85837959..85840215-chr11:86014707..86016987,2	K562	blood:

Variant related genes	Relation type
ENSG00000137504	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11234604	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11820048	0.81[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs11820262	0.83[ASN][1000 genomes]
rs11820306	0.83[ASN][1000 genomes]
rs11822824	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11823516	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11823646	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11825208	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11827831	0.85[EUR][1000 genomes]
rs2167611	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3758879	0.83[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs57089989	0.89[ASN][1000 genomes]
rs58014336	0.85[EUR][1000 genomes]
rs58563351	0.85[EUR][1000 genomes]
rs60116315	0.85[EUR][1000 genomes]
rs7108053	0.85[EUR][1000 genomes]
rs7115858	0.85[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs7116227	0.85[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs7118858	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7129295	0.83[ASN][1000 genomes]
rs7928648	0.85[EUR][1000 genomes]
rs7931249	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7936284	0.85[EUR][1000 genomes]
rs7951478	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832223	chr11:85845315-86015957	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv508643	chr11:85988577-86047719	Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86014000-86016000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr11:86014000-86026000	Weak transcription	Placenta	Placenta
3	chr11:86014000-86030000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr11:86014000-86030000	Weak transcription	Lung	lung
5	chr11:86014200-86015400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
6	chr11:86014200-86015400	Enhancers	Primary T killer memory cells from peripheral blood	blood
7	chr11:86014200-86016000	Weak transcription	Fetal Muscle Trunk	muscle
8	chr11:86014200-86024600	Weak transcription	Primary T cells fromperipheralblood	blood
9	chr11:86014200-86024600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr11:86014200-86024800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr11:86014200-86028000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr11:86014200-86030000	Weak transcription	Left Ventricle	heart
13	chr11:86014200-86031600	Weak transcription	Ovary	ovary
14	chr11:86014200-86052000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr11:86014200-86055400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr11:86014200-86057400	Weak transcription	Aorta	Aorta
17	chr11:86014400-86015400	Enhancers	Primary T helper naive cells from peripheral blood	blood
18	chr11:86014400-86015400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
19	chr11:86014400-86015400	Enhancers	Adipose Nuclei	Adipose
20	chr11:86014400-86024000	Weak transcription	Fetal Thymus	thymus
21	chr11:86014400-86024400	Weak transcription	Monocytes-CD14+_RO01746	blood
22	chr11:86014400-86024600	Weak transcription	Fetal Muscle Leg	muscle
23	chr11:86014400-86027800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr11:86014400-86030000	Weak transcription	Primary neutrophils fromperipheralblood	blood
25	chr11:86014400-86034400	Weak transcription	HSMM	muscle
26	chr11:86014400-86066600	Weak transcription	HSMMtube	muscle
27	chr11:86014600-86015400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr11:86014600-86015400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr11:86014600-86015400	Enhancers	Brain Cingulate Gyrus	brain
30	chr11:86014600-86015800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr11:86014600-86015800	Weak transcription	Fetal Intestine Small	intestine
32	chr11:86014600-86016000	Weak transcription	Fetal Stomach	stomach
33	chr11:86014600-86016200	Enhancers	Skeletal Muscle Female	skeletal muscle
34	chr11:86014600-86017000	Weak transcription	HUES48 Cell Line	embryonic stem cell
35	chr11:86014600-86018600	Weak transcription	Stomach Mucosa	stomach
36	chr11:86014600-86024000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
37	chr11:86014600-86024200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr11:86014600-86024400	Weak transcription	Primary hematopoietic stem cells	blood
39	chr11:86014600-86024400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr11:86014600-86024600	Weak transcription	Primary monocytes fromperipheralblood	blood
41	chr11:86014600-86024600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr11:86014600-86024600	Weak transcription	HMEC	breast
43	chr11:86014600-86024800	Weak transcription	Primary B cells from peripheral blood	blood
44	chr11:86014600-86024800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
45	chr11:86014600-86024800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
46	chr11:86014600-86024800	Weak transcription	Liver	Liver
47	chr11:86014600-86024800	Weak transcription	Psoas Muscle	Psoas
48	chr11:86014600-86024800	Weak transcription	Rectal Mucosa Donor 29	rectum
49	chr11:86014600-86025000	Weak transcription	Primary B cells from cord blood	blood
50	chr11:86014600-86026600	Weak transcription	Fetal Brain Male	brain

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