Variant report

Variant	rs11827659
Chromosome Location	chr11:23980832-23980833
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10500971	0.93[AFR][1000 genomes];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10734347	0.89[ASN][1000 genomes]
rs10742018	0.89[ASN][1000 genomes]
rs10742019	0.83[ASN][1000 genomes]
rs10742020	0.89[ASN][1000 genomes]
rs10742021	0.89[ASN][1000 genomes]
rs10767145	0.89[ASN][1000 genomes]
rs10834247	0.85[ASN][1000 genomes]
rs10834248	0.91[ASN][1000 genomes]
rs11027639	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11823765	0.93[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11825108	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11825842	0.93[AFR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11825890	0.93[AFR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11825892	0.93[AFR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11827016	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11828069	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16911969	0.95[AFR][1000 genomes];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16911972	0.95[AFR][1000 genomes];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1879230	0.94[ASN][1000 genomes]
rs1915068	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1915069	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2037834	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2176788	0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2403865	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2955452	0.81[ASN][1000 genomes]
rs4244510	0.89[ASN][1000 genomes]
rs4244511	0.87[ASN][1000 genomes]
rs4506647	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4923145	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55988898	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6483998	0.87[ASN][1000 genomes]
rs6483999	0.89[ASN][1000 genomes]
rs6484003	0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7104264	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7104524	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7105348	0.89[ASN][1000 genomes]
rs7106159	0.93[AFR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7112747	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7130113	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7930923	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7932515	0.81[ASN][1000 genomes]
rs7938829	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897062	chr11:23687928-24031627	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv916840	chr11:23710275-24064119	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:23979000-23981400	Weak transcription	NH-A	brain
2	chr11:23980200-23981000	Enhancers	Placenta Amnion	Placenta Amnion
3	chr11:23980400-23981200	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr11:23980400-23981800	Enhancers	H1 Cell Line	embryonic stem cell
5	chr11:23980400-23981800	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr11:23980400-23981800	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr11:23980400-23982400	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr11:23980600-23981200	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr11:23980600-23982000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
10	chr11:23980600-23982000	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr11:23980800-23981000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
12	chr11:23980800-23981800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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