Variant report

Variant	rs1879230
Chromosome Location	chr11:23982573-23982574
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10500971	0.85[ASN][1000 genomes]
rs10734347	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10742018	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10742019	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10742020	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10742021	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10767145	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10834242	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10834243	0.94[EUR][1000 genomes]
rs10834247	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10834248	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11027639	0.86[ASN][1000 genomes]
rs11823765	0.86[ASN][1000 genomes]
rs11825108	0.86[ASN][1000 genomes]
rs11825842	0.85[ASN][1000 genomes]
rs11825890	0.85[ASN][1000 genomes]
rs11825892	0.85[ASN][1000 genomes]
rs11827016	0.94[ASN][1000 genomes]
rs11827659	0.94[ASN][1000 genomes]
rs11828069	0.90[ASN][1000 genomes]
rs16911969	0.82[ASN][1000 genomes]
rs16911972	0.85[ASN][1000 genomes]
rs1915053	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1915068	0.94[ASN][1000 genomes]
rs1915069	0.94[ASN][1000 genomes]
rs2037834	0.88[ASN][1000 genomes]
rs2176788	0.86[ASN][1000 genomes]
rs2955452	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4244510	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4244511	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4506647	0.90[ASN][1000 genomes]
rs4923145	0.94[ASN][1000 genomes]
rs55988898	0.86[ASN][1000 genomes]
rs6483998	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6483999	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6484003	0.84[ASN][1000 genomes]
rs7104264	0.90[ASN][1000 genomes]
rs7104524	0.90[ASN][1000 genomes]
rs7105348	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7106159	0.86[ASN][1000 genomes]
rs7112747	0.91[ASN][1000 genomes]
rs7130113	0.88[ASN][1000 genomes]
rs7930923	0.91[ASN][1000 genomes]
rs7932515	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7938829	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897062	chr11:23687928-24031627	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv916840	chr11:23710275-24064119	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv897070	chr11:23982573-24074207	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv897071	chr11:23982573-24157765	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:23981800-23983000	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr11:23981800-23983600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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