Variant report

Variant	rs2955452
Chromosome Location	chr11:24007319-24007320
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10500971	0.87[ASN][1000 genomes]
rs10734347	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10742018	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10742019	0.94[EUR][1000 genomes]
rs10742020	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10742021	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10767145	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10834242	0.82[EUR][1000 genomes]
rs10834243	0.89[EUR][1000 genomes]
rs10834247	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10834248	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11027639	0.88[ASN][1000 genomes]
rs11823765	0.88[ASN][1000 genomes]
rs11825108	0.88[ASN][1000 genomes]
rs11825842	0.87[ASN][1000 genomes]
rs11825890	0.87[ASN][1000 genomes]
rs11825892	0.87[ASN][1000 genomes]
rs11827016	0.81[ASN][1000 genomes]
rs11827659	0.81[ASN][1000 genomes]
rs11828069	0.82[ASN][1000 genomes]
rs16911969	0.84[ASN][1000 genomes]
rs16911972	0.87[ASN][1000 genomes]
rs1879230	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1915053	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1915068	0.81[ASN][1000 genomes]
rs1915069	0.81[ASN][1000 genomes]
rs2176788	0.88[ASN][1000 genomes]
rs4244510	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4244511	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4506647	0.82[ASN][1000 genomes]
rs4923145	0.81[ASN][1000 genomes]
rs55988898	0.88[ASN][1000 genomes]
rs6483998	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6483999	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6484003	0.86[ASN][1000 genomes]
rs7104264	0.82[ASN][1000 genomes]
rs7104524	0.82[ASN][1000 genomes]
rs7105348	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7106159	0.88[ASN][1000 genomes]
rs7112747	0.83[ASN][1000 genomes]
rs7930923	0.83[ASN][1000 genomes]
rs7932515	0.81[EUR][1000 genomes]
rs7938829	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897062	chr11:23687928-24031627	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv916840	chr11:23710275-24064119	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv897070	chr11:23982573-24074207	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv897071	chr11:23982573-24157765	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv897072	chr11:23995576-24085740	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv467744	chr11:24001975-24061085	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv553772	chr11:24001975-24061085	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv467745	chr11:24001975-24091682	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv553773	chr11:24001975-24091682	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv467746	chr11:24001975-24109916	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv553774	chr11:24001975-24109916	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv553775	chr11:24001975-24323572	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:23999200-24012400	Weak transcription	NHLF	lung
2	chr11:24006400-24009600	Weak transcription	Osteobl	bone
3	chr11:24006400-24009800	Weak transcription	NH-A	brain
4	chr11:24006800-24009200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr11:24006800-24009600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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