Variant report

Variant	rs4244511
Chromosome Location	chr11:23974839-23974840
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10734347	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10742018	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10742019	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10742020	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10742021	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10767145	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10834242	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10834243	0.90[EUR][1000 genomes]
rs10834247	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10834248	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11027639	0.80[ASN][1000 genomes]
rs11823765	0.80[ASN][1000 genomes]
rs11825108	0.80[ASN][1000 genomes]
rs11827016	0.87[ASN][1000 genomes]
rs11827659	0.87[ASN][1000 genomes]
rs11828069	0.84[ASN][1000 genomes]
rs16911969	0.84[ASN][1000 genomes]
rs1879230	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1915053	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1915068	0.87[ASN][1000 genomes]
rs1915069	0.87[ASN][1000 genomes]
rs2037834	0.90[ASN][1000 genomes]
rs2176788	0.80[ASN][1000 genomes]
rs2955452	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4244510	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4506647	0.84[ASN][1000 genomes]
rs4923145	0.87[ASN][1000 genomes]
rs55988898	0.80[ASN][1000 genomes]
rs6483998	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6483999	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7104264	0.84[ASN][1000 genomes]
rs7104524	0.84[ASN][1000 genomes]
rs7105348	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7106159	0.80[ASN][1000 genomes]
rs7112747	0.85[ASN][1000 genomes]
rs7130113	0.90[ASN][1000 genomes]
rs7930923	0.85[ASN][1000 genomes]
rs7932515	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7938829	0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897062	chr11:23687928-24031627	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv916840	chr11:23710275-24064119	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:23970800-23978400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr11:23973600-23975200	Weak transcription	Fetal Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links