Variant report
| Variant | rs7932515 |
|---|---|
| Chromosome Location | chr11:23966043-23966044 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs10734347 | 0.85[AFR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs10742018 | 0.84[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs10742019 | 0.84[EUR][1000 genomes] |
| rs10742020 | 0.85[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs10742021 | 0.85[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs10767145 | 0.81[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs10834242 | 0.87[AFR][1000 genomes] |
| rs10834247 | 0.85[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs10834248 | 0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs11827016 | 0.81[ASN][1000 genomes] |
| rs11827659 | 0.81[ASN][1000 genomes] |
| rs1879230 | 0.85[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs1915053 | 0.81[EUR][1000 genomes] |
| rs1915068 | 0.81[ASN][1000 genomes] |
| rs1915069 | 0.81[ASN][1000 genomes] |
| rs2037834 | 0.81[ASN][1000 genomes] |
| rs2955452 | 0.81[EUR][1000 genomes] |
| rs4244510 | 0.85[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs4244511 | 0.82[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs4923145 | 0.81[ASN][1000 genomes] |
| rs6483998 | 0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs6483999 | 0.81[AFR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs7105348 | 0.83[AFR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs7130113 | 0.80[AFR][1000 genomes];0.81[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv897062 | chr11:23687928-24031627 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv916840 | chr11:23710275-24064119 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:23964600-23967800 | Weak transcription | IMR90 fetal lung fibroblasts Cell Line | lung |
