Variant report

Variant	rs11828099
Chromosome Location	chr11:55322020-55322021
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs11823375	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11823401	0.96[AFR][1000 genomes]
rs11825893	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11826463	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11827117	0.96[AFR][1000 genomes]
rs11827799	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs11828046	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11828727	0.96[AFR][1000 genomes]
rs17158644	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17159161	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17579825	0.96[AFR][1000 genomes]
rs17580994	0.96[AFR][1000 genomes]
rs17581051	0.96[AFR][1000 genomes]
rs56063922	0.96[AFR][1000 genomes]
rs56295433	1.00[AMR][1000 genomes]
rs56333107	0.96[AFR][1000 genomes]
rs61916282	0.96[AFR][1000 genomes]
rs61916283	0.96[AFR][1000 genomes]
rs61916284	0.96[AFR][1000 genomes]
rs61916285	0.96[AFR][1000 genomes]
rs61916289	0.96[AFR][1000 genomes]
rs61916319	0.96[AFR][1000 genomes]
rs61916403	0.82[AFR][1000 genomes]
rs61917939	0.96[AFR][1000 genomes]
rs7103342	0.96[AFR][1000 genomes]
rs7106100	0.82[AFR][1000 genomes]
rs7110861	0.96[AFR][1000 genomes]
rs7111663	0.82[AFR][1000 genomes]
rs7111681	0.82[AFR][1000 genomes]
rs7119347	0.96[AFR][1000 genomes]
rs7121555	0.96[AFR][1000 genomes]
rs7924882	0.82[AFR][1000 genomes]
rs7929606	0.96[AFR][1000 genomes]
rs7940305	0.86[AFR][1000 genomes]
rs7940435	0.89[AFR][1000 genomes]
rs7940928	0.82[AFR][1000 genomes]
rs7941860	0.96[AFR][1000 genomes]
rs7946976	1.00[YRI][hapmap]
rs7948802	0.82[AFR][1000 genomes]
rs7950755	0.96[AFR][1000 genomes]
rs7950956	0.96[AFR][1000 genomes]
rs9666121	0.96[AFR][1000 genomes]
rs9666744	0.89[AFR][1000 genomes]
rs9667732	0.96[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:29 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830215	chr11:54711990-55340379	ZNF genes & repeats Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv1052144	chr11:54720811-55438474	ZNF genes & repeats Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	nsv1053949	chr11:54773881-55363328	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
4	nsv1051643	chr11:54826801-55363328	ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
5	nsv524091	chr11:54875038-55522549	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
6	nsv554797	chr11:55035411-55864161	Enhancers Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	59 gene(s)	inside rSNPs	diseases
7	nsv467886	chr11:55083434-55408700	Enhancers Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	19 gene(s)	inside rSNPs	diseases
8	nsv554799	chr11:55083434-55408700	Active TSS ZNF genes & repeats Enhancers Bivalent Enhancer Weak transcription	TF binding region CpG island Chromatin interactive region	19 gene(s)	inside rSNPs	diseases
9	nsv554800	chr11:55083434-55695985	ZNF genes & repeats Active TSS Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
10	nsv916012	chr11:55084067-55622531	ZNF genes & repeats Active TSS Weak transcription Bivalent Enhancer Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
11	nsv1067779	chr11:55086995-55980406	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases
12	nsv491694	chr11:55086995-55980406	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases
13	nsv1036325	chr11:55119267-55442306	ZNF genes & repeats Enhancers Active TSS Weak transcription Bivalent Enhancer	TF binding region CpG island	19 gene(s)	inside rSNPs	diseases
14	esv2751031	chr11:55121706-55340753	Enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Weak transcription	TF binding region CpG island	14 gene(s)	inside rSNPs	diseases
15	nsv821668	chr11:55153930-55816828	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
16	nsv518225	chr11:55171677-55408700	ZNF genes & repeats Active TSS Bivalent Enhancer Weak transcription Enhancers	TF binding region CpG island	14 gene(s)	inside rSNPs	diseases
17	esv2758271	chr11:55222420-55621884	Weak transcription ZNF genes & repeats Enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
18	esv2759828	chr11:55222420-55638112	ZNF genes & repeats Enhancers Active TSS Weak transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
19	nsv832154	chr11:55222427-55408933	Enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Weak transcription	TF binding region CpG island	10 gene(s)	inside rSNPs	diseases
20	nsv1046475	chr11:55241003-55381810	ZNF genes & repeats Bivalent Enhancer Active TSS Weak transcription Enhancers	TF binding region CpG island	8 gene(s)	inside rSNPs	diseases
21	nsv1047882	chr11:55241003-55386385	Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer	TF binding region CpG island	8 gene(s)	inside rSNPs	diseases
22	esv2751032	chr11:55276602-55355722	ZNF genes & repeats Enhancers Active TSS Weak transcription Bivalent Enhancer	TF binding region CpG island	4 gene(s)	inside rSNPs	diseases
23	nsv832155	chr11:55277241-55432666	Active TSS Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer	TF binding region CpG island	7 gene(s)	inside rSNPs	diseases
24	nsv916314	chr11:55289861-55495986	ZNF genes & repeats Active TSS Enhancers Bivalent Enhancer Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
25	nsv1048237	chr11:55312533-55363328	ZNF genes & repeats Bivalent Enhancer Enhancers	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
26	nsv554801	chr11:55314151-55624360	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
27	nsv428256	chr11:55317076-55621884	Active TSS Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
28	nsv1052441	chr11:55319822-55363328	Enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
29	nsv975112	chr11:55321812-55426168	ZNF genes & repeats Enhancers Weak transcription Active TSS Bivalent Enhancer	TF binding region CpG island	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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