Variant report

Variant	rs11832962
Chromosome Location	chr12:63041978-63041979
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	YY1	chr12:63041853-63042049	GM12892	blood:	n/a	n/a

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr12:63039398..63042181-chr12:63096184..63099134,2	MCF-7	breast:
2	chr12:62994712..62998388-chr12:63040223..63045301,6	K562	blood:
3	chr12:63041505..63044112-chr12:63048353..63051271,2	K562	blood:
4	chr12:62996006..62999301-chr12:63039821..63044054,4	MCF-7	breast:
5	chr12:63034981..63038220-chr12:63040076..63042937,3	MCF-7	breast:
6	chr12:63034717..63037649-chr12:63039194..63042442,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000238475	TF binding region
ENSG00000221949	Chromatin interaction
ENSG00000199179	Chromatin interaction
ENSG00000257354	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10128947	1.00[AMR][1000 genomes]
rs11174622	1.00[AMR][1000 genomes]
rs11174624	1.00[AMR][1000 genomes]
rs11174625	1.00[AMR][1000 genomes]
rs11829074	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12301931	1.00[AMR][1000 genomes]
rs12302158	1.00[AMR][1000 genomes]
rs12302279	1.00[AMR][1000 genomes]
rs12302290	1.00[AMR][1000 genomes]
rs12302395	1.00[AMR][1000 genomes]
rs12306385	1.00[AMR][1000 genomes]
rs57366716	1.00[AMR][1000 genomes]
rs7295849	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73312458	1.00[AMR][1000 genomes]
rs7965725	1.00[AMR][1000 genomes]
rs7978602	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv741	chr12:63038255-63064846	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:63026600-63049800	Weak transcription	Right Atrium	heart
2	chr12:63031800-63047000	Weak transcription	Liver	Liver
3	chr12:63034400-63042000	Weak transcription	Gastric	stomach
4	chr12:63034400-63043200	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr12:63035000-63048000	Weak transcription	Primary hematopoietic stem cells	blood
6	chr12:63035200-63043200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr12:63035200-63048400	Weak transcription	Fetal Muscle Leg	muscle
8	chr12:63035200-63069800	Weak transcription	Left Ventricle	heart
9	chr12:63035600-63042200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr12:63035600-63043200	Weak transcription	A549	lung
11	chr12:63035600-63044200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr12:63036400-63044000	Weak transcription	Duodenum Mucosa	Duodenum
13	chr12:63037200-63050800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr12:63037200-63069600	Weak transcription	Fetal Intestine Large	intestine
15	chr12:63038200-63043200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr12:63038600-63043400	Strong transcription	HepG2	liver
17	chr12:63039000-63042000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr12:63039200-63042600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr12:63039200-63070000	Weak transcription	Pancreas	Pancrea
20	chr12:63039600-63042000	Weak transcription	Ovary	ovary
21	chr12:63040000-63042600	Genic enhancers	HUES6 Cell Line	embryonic stem cell
22	chr12:63040200-63042600	Enhancers	Breast Myoepithelial Primary Cells	Breast
23	chr12:63040200-63042600	Strong transcription	Fetal Intestine Small	intestine
24	chr12:63040400-63042000	Genic enhancers	ES-UCSF4 Cell Line	embryonic stem cell
25	chr12:63040400-63042400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr12:63040400-63042400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
27	chr12:63040400-63042400	Genic enhancers	Brain Hippocampus Middle	brain
28	chr12:63040600-63042400	Enhancers	Brain Substantia Nigra	brain
29	chr12:63040800-63042000	Enhancers	iPS-18 Cell Line	embryonic stem cell
30	chr12:63040800-63042000	Enhancers	Cortex derived primary cultured neurospheres	brain
31	chr12:63040800-63042000	Enhancers	Brain Cingulate Gyrus	brain
32	chr12:63040800-63042400	Enhancers	H1 Cell Line	embryonic stem cell
33	chr12:63040800-63042800	Enhancers	iPS-15b Cell Line	embryonic stem cell
34	chr12:63041000-63042200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr12:63041200-63042000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr12:63041200-63042200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr12:63041200-63042200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr12:63041400-63042000	Enhancers	Adipose Nuclei	Adipose
39	chr12:63041400-63042200	Enhancers	iPS-20b Cell Line	embryonic stem cell
40	chr12:63041400-63042200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
41	chr12:63041400-63042200	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
42	chr12:63041400-63043400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
43	chr12:63041400-63049800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr12:63041600-63042200	Weak transcription	H9 Cell Line	embryonic stem cell
45	chr12:63041600-63042200	Weak transcription	HUES64 Cell Line	embryonic stem cell
46	chr12:63041600-63042200	Weak transcription	Fetal Muscle Trunk	muscle
47	chr12:63041600-63042400	Genic enhancers	Brain Inferior Temporal Lobe	brain
48	chr12:63041600-63042600	Weak transcription	Thymus	Thymus
49	chr12:63041600-63043200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr12:63041600-63043600	Weak transcription	HUES48 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links