Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11148205	0.94[CHB][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs12859216	0.94[CHB][hapmap];0.87[JPT][hapmap];0.86[ASN][1000 genomes]
rs12865698	0.82[ASN][1000 genomes]
rs12871332	1.00[CHB][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs12877403	0.94[CHB][hapmap];0.87[JPT][hapmap];0.86[ASN][1000 genomes]
rs3790015	0.94[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs3790017	0.92[ASN][1000 genomes]
rs3803198	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3803199	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3803200	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4606607	0.81[ASN][1000 genomes]
rs913467	0.88[CHB][hapmap]
rs927992	0.94[CHB][hapmap];0.85[JPT][hapmap];0.85[ASN][1000 genomes]
rs9526717	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs9563015	1.00[CHB][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs9563017	0.82[ASN][1000 genomes]
rs9563018	0.94[CHB][hapmap];0.94[JPT][hapmap]
rs9568502	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs9568503	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs9568504	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832610	chr13:51636661-51822106	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51632600-51639800	Enhancers	Brain Germinal Matrix	brain
2	chr13:51632800-51639200	Weak transcription	Spleen	Spleen
3	chr13:51633200-51639400	Weak transcription	Fetal Muscle Leg	muscle
4	chr13:51633200-51639800	Weak transcription	Fetal Stomach	stomach
5	chr13:51633200-51641000	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr13:51633400-51638800	Weak transcription	Fetal Lung	lung
7	chr13:51633400-51657800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr13:51633800-51640000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr13:51633800-51640800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr13:51634400-51640800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr13:51636200-51640000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr13:51636800-51639800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr13:51637000-51641600	Enhancers	Primary hematopoietic stem cells	blood
14	chr13:51637600-51638000	Weak transcription	Fetal Brain Male	brain
15	chr13:51637600-51638200	Enhancers	Primary hematopoietic stem cells short term culture	blood
16	chr13:51637600-51638400	Enhancers	Fetal Muscle Trunk	muscle
17	chr13:51637600-51639600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr13:51637800-51639200	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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