Variant report

Variant	rs9563018
Chromosome Location	chr13:51656046-51656047
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11148205	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11842080	0.94[CHB][hapmap];0.94[JPT][hapmap]
rs12859216	0.94[CHB][hapmap];0.87[JPT][hapmap]
rs12865698	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12868262	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12871332	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12877403	0.89[CHB][hapmap];0.82[JPT][hapmap]
rs3790015	0.88[CHB][hapmap];0.94[JPT][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3790017	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3803198	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3803199	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3803200	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4606607	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs71428302	0.81[EUR][1000 genomes]
rs913467	0.88[CHB][hapmap]
rs927992	0.87[CHB][hapmap]
rs9526717	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9563015	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9563017	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9563019	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9563020	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9568502	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9568503	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9568504	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9568505	0.89[AMR][1000 genomes]
rs9568511	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832610	chr13:51636661-51822106	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51633400-51657800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr13:51652800-51667000	Weak transcription	Right Atrium	heart
3	chr13:51654200-51657800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr13:51654800-51671600	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr13:51655000-51656600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr13:51655000-51671200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr13:51655200-51657600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr13:51655600-51656200	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
9	chr13:51655600-51656200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
10	chr13:51655600-51656400	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
11	chr13:51655800-51656800	Enhancers	Fetal Lung	lung
12	chr13:51656000-51656200	Strong transcription	HUES6 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links