Variant report

Variant	rs9563019
Chromosome Location	chr13:51671792-51671793
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11148205	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.88[EUR][1000 genomes]
rs11842080	0.94[CHB][hapmap];0.87[JPT][hapmap]
rs12859216	0.94[CHB][hapmap];0.80[JPT][hapmap]
rs12865698	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12868262	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12871332	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.88[EUR][1000 genomes]
rs12877403	0.89[CHB][hapmap]
rs3790015	0.88[CHB][hapmap];0.87[JPT][hapmap];0.86[EUR][1000 genomes]
rs3790017	0.86[EUR][1000 genomes]
rs3803198	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3803199	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.88[YRI][hapmap];0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3803200	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4606607	0.86[EUR][1000 genomes]
rs71428302	0.81[EUR][1000 genomes]
rs913467	0.88[CHB][hapmap]
rs927992	0.87[CHB][hapmap]
rs9526717	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs9563015	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.88[EUR][1000 genomes]
rs9563017	0.82[AMR][1000 genomes]
rs9563018	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9563020	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9568502	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.88[YRI][hapmap];0.88[EUR][1000 genomes]
rs9568503	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.88[EUR][1000 genomes]
rs9568504	0.88[EUR][1000 genomes]
rs9568511	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832610	chr13:51636661-51822106	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51658000-51672000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr13:51658400-51676600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr13:51670400-51672200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr13:51670400-51672600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
5	chr13:51670400-51672600	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr13:51670600-51673800	Weak transcription	Aorta	Aorta
7	chr13:51670600-51675400	Weak transcription	Fetal Brain Male	brain
8	chr13:51670800-51672800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr13:51671000-51672200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr13:51671000-51672600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr13:51671000-51672800	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr13:51671200-51672400	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr13:51671200-51672600	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr13:51671200-51672800	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr13:51671200-51672800	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr13:51671200-51673000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr13:51671400-51671800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
18	chr13:51671400-51672200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr13:51671600-51671800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
20	chr13:51671600-51672200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr13:51671600-51672200	Enhancers	Cortex derived primary cultured neurospheres	brain
22	chr13:51671600-51672400	Enhancers	Breast Myoepithelial Primary Cells	Breast
23	chr13:51671600-51672800	Enhancers	H1 Cell Line	embryonic stem cell
24	chr13:51671600-51672800	Enhancers	H9 Cell Line	embryonic stem cell

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