Variant report

Variant	rs11854532
Chromosome Location	chr15:77982818-77982819
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:77963405..77965079-chr15:77980096..77983054,2	MCF-7	breast:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs11852429	0.82[MKK][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs11853548	1.00[EUR][1000 genomes]
rs11853824	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11855576	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11857529	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12324340	1.00[EUR][1000 genomes]
rs2667765	1.00[EUR][1000 genomes]
rs28439897	1.00[EUR][1000 genomes]
rs28498563	1.00[EUR][1000 genomes]
rs28498879	1.00[EUR][1000 genomes]
rs28557414	1.00[EUR][1000 genomes]
rs28634734	1.00[EUR][1000 genomes]
rs28635388	1.00[EUR][1000 genomes]
rs34611551	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57215429	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57365401	1.00[EUR][1000 genomes]
rs57738968	1.00[EUR][1000 genomes]
rs58372659	1.00[EUR][1000 genomes]
rs58432220	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58490956	1.00[EUR][1000 genomes]
rs58723442	1.00[EUR][1000 genomes]
rs58745170	1.00[EUR][1000 genomes]
rs59320137	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60322323	1.00[EUR][1000 genomes]
rs60380768	1.00[EUR][1000 genomes]
rs60772286	1.00[EUR][1000 genomes]
rs6495243	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7181139	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7182984	0.83[YRI][hapmap];0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73448973	1.00[EUR][1000 genomes]
rs73450724	1.00[EUR][1000 genomes]
rs73450959	1.00[EUR][1000 genomes]
rs74025393	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8034919	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8037835	1.00[EUR][1000 genomes]
rs8038325	1.00[EUR][1000 genomes]
rs907375	1.00[EUR][1000 genomes]
rs907394	1.00[EUR][1000 genomes]
rs907397	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040852	chr15:77160237-78137541	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv916323	chr15:77485765-78121259	Enhancers Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv833060	chr15:77816654-78035204	Weak transcription Bivalent Enhancer Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	esv1806097	chr15:77817889-78301377	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
5	nsv529491	chr15:77932659-78751516	Genic enhancers Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:77956800-77986800	Weak transcription	Brain Angular Gyrus	brain
2	chr15:77959800-77984800	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr15:77969200-78007600	Weak transcription	Right Atrium	heart
4	chr15:77969400-77983600	Weak transcription	Brain Germinal Matrix	brain
5	chr15:77978600-77983800	Strong transcription	Fetal Brain Female	brain
6	chr15:77980400-77989800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr15:77981200-77988400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr15:77982800-77983000	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links